From 8dfc49763eb5a45deb3b5557aa61a7bb29738dfe Mon Sep 17 00:00:00 2001
From: Wai Yi Leung <w.y.leung@lumc.nl>
Date: Mon, 9 May 2016 12:13:50 +0200
Subject: [PATCH] Fix samplename column
---
.../sasc/biopet/extensions/breakdancer/breakdancer2vcf.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/biopet-extensions/src/main/resources/nl/lumc/sasc/biopet/extensions/breakdancer/breakdancer2vcf.py b/public/biopet-extensions/src/main/resources/nl/lumc/sasc/biopet/extensions/breakdancer/breakdancer2vcf.py
index 0430667ca..dac0175e9 100644
--- a/public/biopet-extensions/src/main/resources/nl/lumc/sasc/biopet/extensions/breakdancer/breakdancer2vcf.py
+++ b/public/biopet-extensions/src/main/resources/nl/lumc/sasc/biopet/extensions/breakdancer/breakdancer2vcf.py
@@ -94,11 +94,11 @@ _tsv_fields = ('Chr1', 'Pos1', 'Orientation1',
-_vcf_fields = ('CHROM', 'POS', 'ID', 'REF', 'ALT', 'QUAL', 'FILTER', 'INFO', 'FORMAT', 'default')
+_vcf_fields = ('CHROM', 'POS', 'ID', 'REF', 'ALT', 'QUAL', 'FILTER', 'INFO', 'FORMAT')
TS_NOW = datetime.datetime.now()
-VCF_HEADER = """##fileformat=VCFv4.1
+VCF_HEADER = """##fileformat=VCFv4.2
##fileDate={filedate}
##source=breakdancer-max
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
--
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