From 8b099b946aeb764071ceb7d2de6f1b82b485f094 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 19 Jan 2016 13:15:14 +0100
Subject: [PATCH] Fixed style
---
.../pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala | 2 +-
.../sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala
index ddeba500e..157013e5b 100644
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala
@@ -5,7 +5,7 @@ import java.io.PrintWriter
import nl.lumc.sasc.biopet.extensions.gatk.CombineVariants
import nl.lumc.sasc.biopet.extensions.samtools.SamtoolsMpileup
import nl.lumc.sasc.biopet.extensions.varscan.{ FixMpileup, VarscanMpileup2cns }
-import nl.lumc.sasc.biopet.extensions.{Bgzip, Tabix}
+import nl.lumc.sasc.biopet.extensions.{ Bgzip, Tabix }
import nl.lumc.sasc.biopet.utils.config.Configurable
/**
diff --git a/public/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala b/public/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
index 23480d4dc..db6337765 100644
--- a/public/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
+++ b/public/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala
@@ -64,7 +64,7 @@ class ShivaVariantcallingTest extends TestNGSuite with Matchers {
raw: Boolean,
bcftools: Boolean,
bcftoolsSinglesample: Boolean,
- freebayes: Boolean,
+ freebayes: Boolean,
varscanCnsSinglesample: Boolean) = {
val callers: ListBuffer[String] = ListBuffer()
if (raw) callers.append("raw")
--
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