Commit 83dfaffe authored by Moustakas's avatar Moustakas
Browse files

Improved phrasing

parent 4ca992a5
# FindRepeatsPacBio
## Introduction
This tool looks and annotates repeat regions inside a BAM file. It extracts the regions of interest from a bed file and then intersects
those regions with the BAM file. On those extracted regions the tool will perform a
Mpileup and counts all insertions/deletions etc. etc. for that specific location on a per read basis.
This tool searches for and annotates repeat regions inside a BAM file.
It intersect the regions provided in the bed file with the BAM file and extracts them.
On the extracted regions *samtools mpileup* will be run and all insertions, deletions or substitutions will be counted on a per read basis
## Example
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