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Created with Raphaël 2.2.022Nov21201918171614111098754231Oct282726252421171413121110654329Sep2827262221201917161513102131Aug2625242322211817151110954129Jul28262522212019141387654129Jun2827242120171514131087632131May30292726252423201918171514131211109Adding clipping and mapping quality plots to reportFormat fixesImplement new methodsAdded common functionsMerge branch 'feature_annotation_versions' into 'develop' Added a bit more docs to argAdded centrifuge to docsMerge branch 'fix-BIOPET-353' into 'develop' Explict test noExceptionChanged to smaller and readable testAdded text to argumentsAdd bamstats to summaryFix output filesSimplify lineplot codeChanged reports summary valuesAdding mapping quality and clipping stats to summaryFixed unit testsMoving flagstats from bamstats to summaryFixed bamstats for single endAdded referenceFixed compile errorAdding output fileAdd basic version of bamstats to pipelineFixing BIOPET-353Fixing config filesFixed testMerge remote-tracking branch 'remotes/origin/develop' into feature_annotation_versionsAdded unit testsMerge branch 'fix-BIOPET-383' into 'develop' autostyle fixesMerge branch 'fix-BIOPET-458' into 'develop' fix testsFormat changeback to exceptionMerge remote-tracking branch 'remotes/origin/develop' into feature_annotation_versionsRemove redundant checksFixed nullpointerfix logger.errorslight improvement of message and autostyle fixesthrow error when no libraries in config