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biopet.biopet
Commits
82ad6a8f
Commit
82ad6a8f
authored
Apr 08, 2015
by
Wai Yi Leung
Browse files
Merge branch 'patch-mpileup' into 'develop'
Fix intervals Fix for #128 See merge request !145
parents
e35cb525
860441ab
Changes
1
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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala
View file @
82ad6a8f
...
...
@@ -30,7 +30,7 @@ class SamtoolsMpileup(val root: Configurable) extends Samtools {
@Input
(
doc
=
"Reference fasta"
)
var
reference
:
File
=
config
(
"reference"
)
@Input
(
doc
=
"Interval bed"
)
@Input
(
doc
=
"Interval bed"
,
required
=
false
)
var
intervalBed
:
Option
[
File
]
=
config
(
"interval_bed"
)
var
disableBaq
:
Boolean
=
config
(
"disable_baq"
,
default
=
false
)
...
...
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