Merge branch 'feature-yaml_support' into 'develop'
Feature yaml support Issue #142 Now implemented a yaml parser and commandline argument to add values to config. Json still uses the old parser, when a file extension is ".yaml" the new parser is used. Later we might remove the old parser completely since SnakeYaml also supports json. See merge request !146
No related branches found
No related tags found
Showing
- public/biopet-framework/pom.xml 5 additions, 0 deletionspublic/biopet-framework/pom.xml
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala 11 additions, 12 deletions...c/main/scala/nl/lumc/sasc/biopet/core/BiopetQScript.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/PipelineCommand.scala 13 additions, 7 deletions...main/scala/nl/lumc/sasc/biopet/core/PipelineCommand.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/config/Config.scala 30 additions, 16 deletions...c/main/scala/nl/lumc/sasc/biopet/core/config/Config.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/config/ConfigValue.scala 10 additions, 40 deletions...n/scala/nl/lumc/sasc/biopet/core/config/ConfigValue.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/config/Configurable.scala 9 additions, 11 deletions.../scala/nl/lumc/sasc/biopet/core/config/Configurable.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/utils/ConfigUtils.scala 68 additions, 185 deletions...rc/main/scala/nl/lumc/sasc/biopet/utils/ConfigUtils.scala
- public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/core/config/ConfigTest.scala 1 addition, 1 deletion...st/scala/nl/lumc/sasc/biopet/core/config/ConfigTest.scala
- public/biopet-framework/src/test/scala/nl/lumc/sasc/biopet/utils/ConfigUtilsTest.scala 5 additions, 5 deletions...est/scala/nl/lumc/sasc/biopet/utils/ConfigUtilsTest.scala
Loading
Please register or sign in to comment