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Commit 64325f97 authored by Sander van der Zeeuw's avatar Sander van der Zeeuw
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change sample name in varscan vcf

parent a35c3c9c
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public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala
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......@@ -52,7 +52,7 @@ class VarscanCnsSingleSample(val root: Configurable) extends Variantcaller {
}
val varscan = new VarscanMpileup2cns(this)
varscan.vcfSampleList = Some(sampleVcf)
varscan.vcfSampleList = Some(sampleFile)
add(mpileup | fixMpileup | varscan | new Bgzip(this) > sampleVcf)
add(Tabix(this, sampleVcf))
......
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