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Created with Raphaël 2.2.01Mar29Feb262524232221181716151211109875432129Jan28272625232221201918171514121110865430Dec29282625242322211817161514131110764330Nov2927262524232019correct foldleft functionsummary for vepReformat release notes for 0.6.0Update gentrap options, reflecting the refactor.Merge branch 'feature-dict_check' into 'develop' Adding tests to Flexiprep to cover the FastQ validation and abort on corrupt FastQformattingRemoving png extension (these will be added by the R script for the specific chromosomes plottedAnother filename and output directory manglingSimplify the report for plots for Gentrap / TinyCap heatmaps. Only 1 template file, defining the picture path in the Report instead of the template.Merge branch 'develop' into feature-small_rnaMerge remote-tracking branch 'remotes/origin/fix-278' into feature-skip_abortFix scriptMerge branch 'feature-tagging' into 'develop' TypoChange paths for the FreeC output.fix protected flagLet kopisu run for more than one sampleTypoFixed intermediateMerge branch 'feature-seqstat-reportfragmentlengths' into 'develop' pindel2vcf is crashing on unknown arguments. remove the dummy argument (used as requirement to link to pindel) Not needed anymore.progress counter in seqstat`len_histogram` is a List now, starting from 0 and ends at the max length of found sequencesAdd mock test to FreeCAdded tags documentationAdded tags to SampleTsvToJsonAdded tags to summaryadd all ze optionsMerge remote-tracking branch 'remotes/origin/fix-278' into feature-skip_abortForgot to delete tmp file on exitMake test-coverage for BamUtils 100%Add options when starting FreeC from KopisuAdd FreeC wrapper (updated for FreeC 8.7)Merge branch 'develop' into feature-cnvpipelineRemove redundant codeFix readQualHistoMap, reporting wrong number (took counts instead of idx)Fix for issue #258Added option to skip abort stepMerge branch 'feature-report_core_testing' into 'develop'