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biopet.biopet
Commits
636158a5
Commit
636158a5
authored
Mar 14, 2016
by
Peter van 't Hof
Browse files
Remove unused var
parent
397df459
Changes
1
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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala
View file @
636158a5
...
...
@@ -97,7 +97,6 @@ class Freebayes(val root: Configurable) extends BiopetCommandLineFunction with R
var
mismatch_base_quality_threshold
:
Option
[
Double
]
=
config
(
"mismatch_base_quality_threshold"
)
var
base_quality_cap
:
Option
[
Double
]
=
config
(
"base_quality_cap"
)
var
prob_contamination
:
Option
[
Double
]
=
config
(
"prob_contamination"
)
var
stdin
:
Boolean
=
config
(
"stdin"
,
default
=
false
)
var
only_use_input_alleles
:
Boolean
=
config
(
"only_use_input_alleles"
,
default
=
false
)
var
report_all_haplotype_alleles
:
Boolean
=
config
(
"report_all_haplotype_alleles"
,
default
=
false
)
var
report_monomorphic
:
Boolean
=
config
(
"report_monomorphic"
,
default
=
false
)
...
...
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