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biopet.biopet
Commits
397df459
Commit
397df459
authored
Mar 14, 2016
by
Peter van 't Hof
Browse files
Fixed value type
parent
5d4c1d80
Changes
1
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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala
View file @
397df459
...
...
@@ -81,7 +81,7 @@ class Freebayes(val root: Configurable) extends BiopetCommandLineFunction with R
var
read_max_mismatch_fraction
:
Option
[
Int
]
=
config
(
"read_max_mismatch_fraction"
)
var
read_snp_limit
:
Option
[
Int
]
=
config
(
"read_snp_limit"
)
var
read_indel_limit
:
Option
[
Int
]
=
config
(
"read_indel_limit"
)
var
min_alternate_fraction
:
Option
[
Int
]
=
config
(
"min_alternate_fraction"
)
var
min_alternate_fraction
:
Option
[
Double
]
=
config
(
"min_alternate_fraction"
)
var
min_alternate_count
:
Option
[
Int
]
=
config
(
"min_alternate_count"
)
var
min_alternate_qsum
:
Option
[
Int
]
=
config
(
"min_alternate_qsum"
)
var
min_alternate_total
:
Option
[
Int
]
=
config
(
"min_alternate_total"
)
...
...
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