From 636158a52e9e011eb47cd3d128cf08b55afd83d3 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 14 Mar 2016 09:35:18 +0100
Subject: [PATCH] Remove unused var
---
.../main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala | 1 -
1 file changed, 1 deletion(-)
diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala
index 059785332..3cf3b47d5 100644
--- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala
+++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/Freebayes.scala
@@ -97,7 +97,6 @@ class Freebayes(val root: Configurable) extends BiopetCommandLineFunction with R
var mismatch_base_quality_threshold: Option[Double] = config("mismatch_base_quality_threshold")
var base_quality_cap: Option[Double] = config("base_quality_cap")
var prob_contamination: Option[Double] = config("prob_contamination")
- var stdin: Boolean = config("stdin", default = false)
var only_use_input_alleles: Boolean = config("only_use_input_alleles", default = false)
var report_all_haplotype_alleles: Boolean = config("report_all_haplotype_alleles", default = false)
var report_monomorphic: Boolean = config("report_monomorphic", default = false)
--
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