Skip to content
GitLab
Menu
Projects
Groups
Snippets
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
56df29e7
Commit
56df29e7
authored
Nov 17, 2014
by
Peter van 't Hof
Browse files
fix queue args
parent
9ba68d82
Changes
1
Hide whitespace changes
Inline
Side-by-side
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
View file @
56df29e7
...
...
@@ -47,8 +47,8 @@ class BastyGenerateFasta(val root: Configurable) extends BiopetJavaCommandLineFu
optional
(
"--inputVcf"
,
inputVcf
)
+
optional
(
"--bamFile"
,
bamFile
)
+
optional
(
"--outputVariants"
,
outputVariants
)
+
optional
(
"--output
Variant
s"
,
outputConsensus
)
+
optional
(
"--outputVariants"
,
outputConsensusVariants
)
+
optional
(
"--output
Consensu
s"
,
outputConsensus
)
+
optional
(
"--output
Consensus
Variants"
,
outputConsensusVariants
)
+
conditional
(
snpsOnly
,
"--snpsOnly"
)
+
optional
(
"--sampleName"
,
sampleName
)
+
required
(
"--outputName"
,
outputName
)
+
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment