From 56df29e78d21456c90fe169972ed824fc0717916 Mon Sep 17 00:00:00 2001
From: Peter van `t Hof <p.j.van_t_hof@lumc.nl>
Date: Mon, 17 Nov 2014 03:52:06 +0100
Subject: [PATCH] fix queue args
---
.../scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
index 19f69afff..878eedd21 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BastyGenerateFasta.scala
@@ -47,8 +47,8 @@ class BastyGenerateFasta(val root: Configurable) extends BiopetJavaCommandLineFu
optional("--inputVcf", inputVcf) +
optional("--bamFile", bamFile) +
optional("--outputVariants", outputVariants) +
- optional("--outputVariants", outputConsensus) +
- optional("--outputVariants", outputConsensusVariants) +
+ optional("--outputConsensus", outputConsensus) +
+ optional("--outputConsensusVariants", outputConsensusVariants) +
conditional(snpsOnly, "--snpsOnly") +
optional("--sampleName", sampleName) +
required("--outputName", outputName) +
--
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