From 5513ff7e23771d3669d92cf051066a1953a83cc2 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Fri, 27 Feb 2015 16:06:42 +0100
Subject: [PATCH] Fix multisample namePrefix
---
.../scala/nl/lumc/sasc/biopet/pipelines/gatk/ShivaGatk.scala | 2 +-
.../scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/ShivaGatk.scala b/protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/ShivaGatk.scala
index 670738fb2..43fcdf935 100644
--- a/protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/ShivaGatk.scala
+++ b/protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/ShivaGatk.scala
@@ -15,7 +15,7 @@ class ShivaGatk(val root: Configurable) extends QScript with ShivaTrait {
override def makeVariantcalling(multisample: Boolean = false): ShivaVariantcallingTrait = {
if (multisample) new ShivaVariantcallingGatk(qscript) {
- override def namePrefix = "multisample."
+ override def namePrefix = "multisample"
override def configName = "shivavariantcalling"
override def configPath: List[String] = super.configPath ::: "multisample" :: Nil
}
diff --git a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
index e13537c1a..ccc274f19 100644
--- a/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
+++ b/public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaTrait.scala
@@ -29,7 +29,7 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript {
def makeVariantcalling(multisample: Boolean = false): ShivaVariantcallingTrait = {
if (multisample) new ShivaVariantcalling(qscript) {
- override def namePrefix = "multisample."
+ override def namePrefix = "multisample"
override def configName = "shivavariantcalling"
override def configPath: List[String] = super.configPath ::: "multisample" :: Nil
}
--
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