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Commit 3a4a8459 authored by Peter van 't Hof's avatar Peter van 't Hof
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Add bam2wig in imls

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protected/basty/Basty.iml
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View file @ 3a4a8459
...@@ -93,5 +93,6 @@ ...@@ -93,5 +93,6 @@
<orderEntry type="module" module-name="Mapping" /> <orderEntry type="module" module-name="Mapping" />
<orderEntry type="module" module-name="Flexiprep" /> <orderEntry type="module" module-name="Flexiprep" />
<orderEntry type="module" module-name="BamMetrics" /> <orderEntry type="module" module-name="BamMetrics" />
<orderEntry type="module" module-name="Bam2Wig" />
</component> </component>
</module> </module>
\ No newline at end of file
public/bam2wig/Bam2Wig.iml 0 → 100644
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<?xml version="1.0" encoding="UTF-8"?>
<module org.jetbrains.idea.maven.project.MavenProjectsManager.isMavenModule="true" type="JAVA_MODULE" version="4">
<component name="NewModuleRootManager" inherit-compiler-output="false">
<output url="file://$MODULE_DIR$/target/classes" />
<output-test url="file://$MODULE_DIR$/target/test-classes" />
<content url="file://$MODULE_DIR$">
<sourceFolder url="file://$MODULE_DIR$/src/main/resources" type="java-resource" />
<sourceFolder url="file://$MODULE_DIR$/src/main/scala" isTestSource="false" />
<excludeFolder url="file://$MODULE_DIR$/target" />
</content>
<orderEntry type="inheritedJdk" />
<orderEntry type="sourceFolder" forTests="false" />
<orderEntry type="module" module-name="BiopetFramework" />
<orderEntry type="library" name="Maven: org.scala-lang:scala-library:2.11.2" level="project" />
<orderEntry type="library" name="Maven: org.broadinstitute.gatk:gatk-queue:3.3" level="project" />
<orderEntry type="library" name="Maven: org.broadinstitute.gatk:gatk-tools-public:3.3" level="project" />
<orderEntry type="library" name="Maven: org.broadinstitute.gatk:gatk-engine:3.3" level="project" />
<orderEntry type="library" name="Maven: org.scala-lang:scala-compiler:2.10.2" level="project" />
<orderEntry type="library" name="Maven: org.scala-lang:scala-reflect:2.10.2" level="project" />
<orderEntry type="library" name="Maven: log4j:log4j:1.2.15" level="project" />
<orderEntry type="library" name="Maven: net.sf.jgrapht:jgrapht:0.8.3" level="project" />
<orderEntry type="library" name="Maven: org.apache.commons:commons-email:1.2" level="project" />
<orderEntry type="library" name="Maven: javax.activation:activation:1.1" level="project" />
<orderEntry type="library" name="Maven: javax.mail:mail:1.4.4" level="project" />
<orderEntry type="module-library">
<library name="Maven: com.sun:tools:1.4.2">
<CLASSES>
<root url="jar:///usr/lib/jvm/java-1.7.0-openjdk-amd64/lib/tools.jar!/" />
</CLASSES>
<JAVADOC />
<SOURCES />
</library>
</orderEntry>
<orderEntry type="library" name="Maven: org.broadinstitute.gatk:gatk-queue-extensions-distribution:3.3" level="project" />
<orderEntry type="library" name="Maven: org.broadinstitute.gatk:gatk-tools-protected:3.3" level="project" />
<orderEntry type="library" name="Maven: gov.nist.math:jama:1.0.2" level="project" />
<orderEntry type="library" scope="RUNTIME" name="Maven: org.broadinstitute.gatk:gatk-queue-extensions-generator:3.3" level="project" />
<orderEntry type="library" name="Maven: org.broadinstitute.gatk:gatk-utils:3.3" level="project" />
<orderEntry type="library" name="Maven: samtools:htsjdk:1.120.1620" level="project" />
<orderEntry type="library" name="Maven: org.xerial.snappy:snappy-java:1.0.3-rc3" level="project" />
<orderEntry type="library" name="Maven: picard:picard:1.120.1579" level="project" />
<orderEntry type="library" name="Maven: org.apache.ant:ant:1.8.2" level="project" />
<orderEntry type="module-library">
<library name="Maven: com.sun:tools.jar:1.5">
<CLASSES>
<root url="jar:///usr/lib/jvm/java-1.7.0-openjdk-amd64/lib/tools.jar!/" />
</CLASSES>
<JAVADOC />
<SOURCES />
</library>
</orderEntry>
<orderEntry type="library" name="Maven: colt:colt:1.2.0" level="project" />
<orderEntry type="library" name="Maven: concurrent:concurrent:1.3.4" level="project" />
<orderEntry type="library" name="Maven: it.unimi.dsi:fastutil:6.5.3" level="project" />
<orderEntry type="library" name="Maven: org.simpleframework:simple-xml:2.0.4" level="project" />
<orderEntry type="library" name="Maven: stax:stax-api:1.0.1" level="project" />
<orderEntry type="library" name="Maven: stax:stax:1.2.0" level="project" />
<orderEntry type="library" name="Maven: org.reflections:reflections:0.9.9-RC1" level="project" />
<orderEntry type="library" name="Maven: org.javassist:javassist:3.16.1-GA" level="project" />
<orderEntry type="library" name="Maven: dom4j:dom4j:1.6.1" level="project" />
<orderEntry type="library" name="Maven: xml-apis:xml-apis:1.0.b2" level="project" />
<orderEntry type="library" name="Maven: org.slf4j:slf4j-log4j12:1.6.1" level="project" />
<orderEntry type="library" name="Maven: org.slf4j:slf4j-api:1.6.1" level="project" />
<orderEntry type="library" name="Maven: org.freemarker:freemarker:2.3.18" level="project" />
<orderEntry type="library" name="Maven: org.apache.commons:commons-jexl:2.1.1" level="project" />
<orderEntry type="library" name="Maven: commons-logging:commons-logging:1.1.1" level="project" />
<orderEntry type="library" name="Maven: commons-lang:commons-lang:2.5" level="project" />
<orderEntry type="library" name="Maven: commons-io:commons-io:2.1" level="project" />
<orderEntry type="library" name="Maven: commons-collections:commons-collections:3.2.1" level="project" />
<orderEntry type="library" name="Maven: org.apache.commons:commons-math:2.2" level="project" />
<orderEntry type="library" name="Maven: net.java.dev.jna:jna:3.2.7" level="project" />
<orderEntry type="library" name="Maven: net.java.dev.jets3t:jets3t:0.8.1" level="project" />
<orderEntry type="library" name="Maven: commons-codec:commons-codec:1.3" level="project" />
<orderEntry type="library" name="Maven: commons-httpclient:commons-httpclient:3.1" level="project" />
<orderEntry type="library" name="Maven: com.jamesmurty.utils:java-xmlbuilder:0.4" level="project" />
<orderEntry type="library" name="Maven: us.levk:drmaa-gridengine:6.2u5" level="project" />
<orderEntry type="library" name="Maven: us.levk:drmaa-common:1.0" level="project" />
<orderEntry type="library" name="Maven: com.google.code.gson:gson:2.2.2" level="project" />
<orderEntry type="library" name="Maven: org.apache.httpcomponents:httpclient:4.1.1" level="project" />
<orderEntry type="library" name="Maven: org.apache.httpcomponents:httpcore:4.1" level="project" />
<orderEntry type="library" name="Maven: com.google.code.cofoja:cofoja:1.0-r139" level="project" />
<orderEntry type="library" name="Maven: io.argonaut:argonaut_2.11:6.1-M4" level="project" />
<orderEntry type="library" name="Maven: org.scalaz:scalaz-core_2.11:7.1.0" level="project" />
<orderEntry type="library" name="Maven: org.scala-lang.modules:scala-parser-combinators_2.11:1.0.2" level="project" />
<orderEntry type="library" name="Maven: org.scala-lang.modules:scala-xml_2.11:1.0.2" level="project" />
<orderEntry type="library" name="Maven: com.github.julien-truffaut:monocle-core_2.11:0.5.0" level="project" />
<orderEntry type="library" name="Maven: org.biojava:biojava3-core:3.1.0" level="project" />
<orderEntry type="library" name="Maven: org.biojava:biojava3-sequencing:3.1.0" level="project" />
<orderEntry type="library" name="Maven: com.google.guava:guava:18.0" level="project" />
<orderEntry type="library" name="Maven: com.github.scopt:scopt_2.10:3.2.0" level="project" />
</component>
</module>
\ No newline at end of file
public/gentrap/Gentrap.iml
+ 1
− 0
View file @ 3a4a8459
...@@ -91,5 +91,6 @@ ...@@ -91,5 +91,6 @@
<orderEntry type="module" module-name="Mapping" /> <orderEntry type="module" module-name="Mapping" />
<orderEntry type="module" module-name="Flexiprep" /> <orderEntry type="module" module-name="Flexiprep" />
<orderEntry type="module" module-name="BamMetrics" /> <orderEntry type="module" module-name="BamMetrics" />
<orderEntry type="module" module-name="Bam2Wig" />
</component> </component>
</module> </module>
\ No newline at end of file
public/mapping/Mapping.iml
+ 1
− 0
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...@@ -90,5 +90,6 @@ ...@@ -90,5 +90,6 @@
<orderEntry type="library" name="Maven: com.github.scopt:scopt_2.10:3.2.0" level="project" /> <orderEntry type="library" name="Maven: com.github.scopt:scopt_2.10:3.2.0" level="project" />
<orderEntry type="module" module-name="Flexiprep" /> <orderEntry type="module" module-name="Flexiprep" />
<orderEntry type="module" module-name="BamMetrics" /> <orderEntry type="module" module-name="BamMetrics" />
<orderEntry type="module" module-name="Bam2Wig" />
</component> </component>
</module> </module>
\ No newline at end of file
public/sage/Sage.iml
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− 0
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...@@ -91,5 +91,6 @@ ...@@ -91,5 +91,6 @@
<orderEntry type="module" module-name="Mapping" /> <orderEntry type="module" module-name="Mapping" />
<orderEntry type="module" module-name="Flexiprep" /> <orderEntry type="module" module-name="Flexiprep" />
<orderEntry type="module" module-name="BamMetrics" /> <orderEntry type="module" module-name="BamMetrics" />
<orderEntry type="module" module-name="Bam2Wig" />
</component> </component>
</module> </module>
\ No newline at end of file
public/yamsvp/Yamsvp.iml
+ 1
− 0
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...@@ -91,5 +91,6 @@ ...@@ -91,5 +91,6 @@
<orderEntry type="module" module-name="Mapping" /> <orderEntry type="module" module-name="Mapping" />
<orderEntry type="module" module-name="Flexiprep" /> <orderEntry type="module" module-name="Flexiprep" />
<orderEntry type="module" module-name="BamMetrics" /> <orderEntry type="module" module-name="BamMetrics" />
<orderEntry type="module" module-name="Bam2Wig" />
</component> </component>
</module> </module>
\ No newline at end of file
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