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Commit 338df07e authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix adapters

parent 61da844e
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......@@ -53,7 +53,7 @@ class CombineReads(val root: Configurable) extends QScript with SummaryQScript w
cutadapt.fastq_input = flash.combinedFastq
cutadapt.fastq_output = this.combinedFastq
cutadapt.stats_output = swapExt(outputDir, cutadapt.fastq_output, ".fastq.gz", ".stats")
cutadapt.opt_anywhere ++= (forwardPrimers ::: reversePrimers)
(forwardPrimers ::: reversePrimers).foreach(cutadapt.opt_anywhere += _)
add(cutadapt)
addSummarizable(cutadapt, "cutadapt")
}
......
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