From 338df07e4c9f654388df885df90cd5ebc12b7d41 Mon Sep 17 00:00:00 2001
From: Peter van 't Hof <p.j.van_t_hof@lumc.nl>
Date: Tue, 29 Dec 2015 15:50:48 +0100
Subject: [PATCH] Fix adapters
---
.../nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala b/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala
index f8cddedfd..2944fb22e 100644
--- a/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala
+++ b/public/gears/src/main/scala/nl/lumc/sasc/biopet/pipelines/gears/CombineReads.scala
@@ -53,7 +53,7 @@ class CombineReads(val root: Configurable) extends QScript with SummaryQScript w
cutadapt.fastq_input = flash.combinedFastq
cutadapt.fastq_output = this.combinedFastq
cutadapt.stats_output = swapExt(outputDir, cutadapt.fastq_output, ".fastq.gz", ".stats")
- cutadapt.opt_anywhere ++= (forwardPrimers ::: reversePrimers)
+ (forwardPrimers ::: reversePrimers).foreach(cutadapt.opt_anywhere += _)
add(cutadapt)
addSummarizable(cutadapt, "cutadapt")
}
--
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