Commit 10835803 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Raise default memory for varscan

parent 3f85a446
...@@ -39,6 +39,8 @@ class VarscanMpileup2cns(val root: Configurable) extends Varscan { ...@@ -39,6 +39,8 @@ class VarscanMpileup2cns(val root: Configurable) extends Varscan {
var vcfSampleList: Option[File] = config("vcf_sample_list") var vcfSampleList: Option[File] = config("vcf_sample_list")
var variants: Option[Int] = config("variants") var variants: Option[Int] = config("variants")
override def defaultCoreMemory = 6.0
override def beforeGraph(): Unit = { override def beforeGraph(): Unit = {
val validValues: Set[Int] = Set(0, 1) val validValues: Set[Int] = Set(0, 1)
// check for boolean vars that are passed as ints // check for boolean vars that are passed as ints
......
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