diff --git a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/varscan/VarscanMpileup2cns.scala b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/varscan/VarscanMpileup2cns.scala index 9dc5b91a8dc7adc9fa7dfc7a241d0de838563ede..085b1bc37031fbf1ef99bd8448dbcba6fc0d07a8 100644 --- a/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/varscan/VarscanMpileup2cns.scala +++ b/public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/varscan/VarscanMpileup2cns.scala @@ -39,6 +39,8 @@ class VarscanMpileup2cns(val root: Configurable) extends Varscan { var vcfSampleList: Option[File] = config("vcf_sample_list") var variants: Option[Int] = config("variants") + override def defaultCoreMemory = 6.0 + override def beforeGraph(): Unit = { val validValues: Set[Int] = Set(0, 1) // check for boolean vars that are passed as ints