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Commit 037acc78 authored by bow's avatar bow
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Update to use htsjdk from GATK 3.3

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biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
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......@@ -10,7 +10,7 @@ import scala.collection.mutable.{ Set => MSet }
import scala.collection.JavaConverters._
import htsjdk.samtools.SAMFileReader
import htsjdk.samtools.SAMFileReader.QueryInterval
import htsjdk.samtools.QueryInterval
import htsjdk.samtools.SAMRecord
import htsjdk.samtools.fastq.{ BasicFastqWriter, FastqReader, FastqRecord }
import htsjdk.tribble.Feature
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