From 037acc788cdbc328adb8d07dba26522a70b878b0 Mon Sep 17 00:00:00 2001
From: bow <bow@bow.web.id>
Date: Mon, 27 Oct 2014 16:05:48 +0100
Subject: [PATCH] Update to use htsjdk from GATK 3.3
---
.../scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
index df5e20100..256f441a3 100644
--- a/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
+++ b/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/ExtractAlignedFastq.scala
@@ -10,7 +10,7 @@ import scala.collection.mutable.{ Set => MSet }
import scala.collection.JavaConverters._
import htsjdk.samtools.SAMFileReader
-import htsjdk.samtools.SAMFileReader.QueryInterval
+import htsjdk.samtools.QueryInterval
import htsjdk.samtools.SAMRecord
import htsjdk.samtools.fastq.{ BasicFastqWriter, FastqReader, FastqRecord }
import htsjdk.tribble.Feature
--
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