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1b165e17

Commit 1b165e17 authored 10 years ago by Peter van 't Hof Committed by bow 10 years ago

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Switch to Gatk/Queue 3.3

parent 4b6d158f

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Changes 6

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biopet-framework/pom.xml 1 addition, 1 deletion

biopet-framework/pom.xml
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/gatk/HaplotypeCaller.scala 0 additions, 2 deletions

...nl/lumc/sasc/biopet/extensions/gatk/HaplotypeCaller.scala
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBam.scala 2 additions, 1 deletion

...cala/nl/lumc/sasc/biopet/tools/CheckAllelesVcfInBam.scala
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/FindRepeatsPacBio.scala 5 additions, 3 deletions

...n/scala/nl/lumc/sasc/biopet/tools/FindRepeatsPacBio.scala
biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala 4 additions, 3 deletions

.../src/main/scala/nl/lumc/sasc/biopet/tools/WipeReads.scala
mvn_install_queue.sh 2 additions, 2 deletions

mvn_install_queue.sh

with 14 additions and 12 deletions

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