Commits · 6d8f168cfe1bba3f7ec1e8b07ca0ca04186fcfd3 · Klinische Genetica / capture-lumc / hutspot · GitLab

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Nov 28, 2017
- fix postq arg · 6d8f168c
  Sander Bollen authored 7 years ago
  
  6d8f168c
- fix sample_name argument · d05afdec
  Sander Bollen authored 7 years ago
  
  d05afdec
- guard against premature deletion of fastq files · 0e4f2a55
  Sander Bollen authored 7 years ago
  
  0e4f2a55
- fix typo · 98dd9055
  Sander Bollen authored 7 years ago
  
  98dd9055
- fix syntax error · 7db7cd43
  Sander Bollen authored 7 years ago
  
  7db7cd43
- fix syntax error · 7a983847
  Sander Bollen authored 7 years ago
  
  7a983847
- fix syntax error · 5307f8e8
  Sander Bollen authored 7 years ago
  
  5307f8e8
- mergestats job · bb737331
  Sander Bollen authored 7 years ago
  
  bb737331
- variadic options are not supported in click. · 2db14bba
  Sander Bollen authored 7 years ago
  
  Converted covstats option in collectstats to variadic argument
  2db14bba
- vcfstats rule · 5d99dd11
  Sander Bollen authored 7 years ago
  
  5d99dd11
- instantiate counters with zero. · ec366de8
  Sander Bollen authored 7 years ago
  
  ec366de8
- is_transition only works in python 2. · 3584db28
  Sander Bollen authored 7 years ago
  
  3584db28
Nov 27, 2017
- add vcfstats script · 0ef6b2d0
  Sander Bollen authored 7 years ago
  
  0ef6b2d0
- import snakemake directly · 2028513f
  Sander Bollen authored 7 years ago
  
  2028513f
- shell should derive from the snakemake object in a script directive · 9e796e0b
  Sander Bollen authored 7 years ago
  
  9e796e0b
- seqtk as script directive · 74038a8c
  Sander Bollen authored 7 years ago
  
  74038a8c
- fix syntax error · 45319a01
  Sander Bollen authored 7 years ago
  
  45319a01
Nov 24, 2017
- vcfstats stub · b39179b3
  Sander Bollen authored 7 years ago
  
  b39179b3
- conda directive for seqtk jobs · 5f6ea05b
  Sander Bollen authored 7 years ago
  
  5f6ea05b
- subsample job · 9949927a
  Sander Bollen authored 7 years ago
  
  9949927a
- conda directive for collectstats · 5f49c05e
  Sander Bollen authored 7 years ago
  
  5f49c05e
- if name == '__main__' block · ee5c2c83
  Sander Bollen authored 7 years ago
  
  ee5c2c83
- collecstats · b90e95f7
  Sander Bollen authored 7 years ago
  
  b90e95f7
- determine gender · 83bdb01e
  Sander Bollen authored 7 years ago
  
  83bdb01e
- more mem for covstats · 35fb717e
  Sander Bollen authored 7 years ago
  
  35fb717e
- collect stats base · 30c3af3a
  Sander Bollen authored 7 years ago
  
  30c3af3a
- fix typo · 41cc5d19
  Sander Bollen authored 7 years ago
  
  41cc5d19
- genome file for covstat · c8e1e8ba
  Sander Bollen authored 7 years ago
  
  c8e1e8ba
- conda directive for covstat · fa62796f
  Sander Bollen authored 7 years ago
  
  fa62796f
- defaults for bed and refflat config values · 81140acc
  Sander Bollen authored 7 years ago
  
  81140acc
- missing redirection to output file · 387d9080
  Sander Bollen authored 7 years ago
  
  387d9080
Nov 23, 2017
- covstats · cb516e24
  Sander Bollen authored 7 years ago
  
  cb516e24
- fix postqc in all · 903a86f2
  Sander Bollen authored 7 years ago
  
  903a86f2
- fix syntax errors · 61b4e690
  Sander Bollen authored 7 years ago
  
  61b4e690
- use config-supplied fastq count as long as fastq-count is not on conda · 17d0210c
  Sander Bollen authored 7 years ago
  
  17d0210c
- metrics in all · a6207a25
  Sander Bollen authored 7 years ago
  
  a6207a25
- fastqc count jobs · 27582b11
  Sander Bollen authored 7 years ago
  
  27582b11
- conda directives for fastqc jobs · 1eafc5f0
  Sander Bollen authored 7 years ago
  
  1eafc5f0
- fastqc metrics · dadfba37
  Sander Bollen authored 7 years ago
  
  dadfba37
- mapping metrics · 1ec3d18a
  Sander Bollen authored 7 years ago
  
  1ec3d18a