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Klinische Genetica
capture-lumc
hutspot
Commits
61b4e690
Commit
61b4e690
authored
Nov 23, 2017
by
Sander Bollen
Browse files
fix syntax errors
parent
17d0210c
Changes
1
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61b4e690
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@@ -319,7 +319,7 @@ rule usable_basenum:
## fastqc
rule fastqc_raw
rule fastqc_raw
:
input:
r1=get_r1,
r2=get_r2
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@@ -331,7 +331,7 @@ rule fastqc_raw
shell: "fastqc -o {params.odir} {input.r1} {input.r2} && echo 'done' > {output.aux}"
rule fastqc_merged
rule fastqc_merged
:
input:
r1=out_path("{sample}/pre_process/{sample}.merged_R1.fastq.gz"),
r2=out_path("{sample}/pre_process/{sample}.merged_R2.fastq.gz")
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@@ -343,7 +343,7 @@ rule fastqc_merged
shell: "fastqc -o {params.odir} {input.r1} {input.r2} && echo 'done' > {output.aux}"
rule fastqc_postqc
rule fastqc_postqc
:
input:
r1=out_path("{sample}/pre_process/{sample}.cutadapt_R1.fastq"),
r2=out_path("{sample}/pre_process/{sample}.cutadapt_R2.fastq")
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