Commit 61b4e690 authored by Sander Bollen's avatar Sander Bollen
Browse files

fix syntax errors

parent 17d0210c
......@@ -319,7 +319,7 @@ rule usable_basenum:
## fastqc
rule fastqc_raw
rule fastqc_raw:
input:
r1=get_r1,
r2=get_r2
......@@ -331,7 +331,7 @@ rule fastqc_raw
shell: "fastqc -o {params.odir} {input.r1} {input.r2} && echo 'done' > {output.aux}"
rule fastqc_merged
rule fastqc_merged:
input:
r1=out_path("{sample}/pre_process/{sample}.merged_R1.fastq.gz"),
r2=out_path("{sample}/pre_process/{sample}.merged_R2.fastq.gz")
......@@ -343,7 +343,7 @@ rule fastqc_merged
shell: "fastqc -o {params.odir} {input.r1} {input.r2} && echo 'done' > {output.aux}"
rule fastqc_postqc
rule fastqc_postqc:
input:
r1=out_path("{sample}/pre_process/{sample}.cutadapt_R1.fastq"),
r2=out_path("{sample}/pre_process/{sample}.cutadapt_R2.fastq")
......
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