Commits · 0f0eadd00a6729f40143fd522181b6617bd9ba0b · Klinische Genetica / capture-lumc / hutspot · GitLab

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Jan 19, 2018
- add schema for stats · 0f0eadd0
  Sander Bollen authored 7 years ago
  
  0f0eadd0
- remove printreads step · b64f19fc
  Sander Bollen authored 7 years ago
  
  b64f19fc
Nov 30, 2017
- summing up · 407e595e
  Bollen authored 7 years ago
  
  407e595e
- cluster configuration · f55918f0
  Bollen authored 7 years ago
  
  f55918f0
- confguration values descriptions · e08b455c
  Bollen authored 7 years ago
  
  e08b455c
- formula fix · 3f59deba
  Bollen authored 7 years ago
  
  3f59deba
- Use python drop-in replacement in case FASTQ_COUNT conig value is not supplied · ad06f674
  Bollen authored 7 years ago
  
  ad06f674
- drop-in replacement for fastq-count · 34268578
  Sander Bollen authored 7 years ago
  
  34268578
Nov 29, 2017
- fixed mapped basenum · 6b977d69
  Sander Bollen authored 7 years ago
  
  6b977d69
- fix collectstats argument · ad49bd4f
  Sander Bollen authored 7 years ago
  
  ad49bd4f
- add rulegraph image · 606d41b6
  Sander Bollen authored 7 years ago
  
  606d41b6
- graph · dec8818b
  Sander Bollen authored 7 years ago
  
  dec8818b
- installation and requirements · 9760cd58
  Sander Bollen authored 7 years ago
  
  9760cd58
- features in readme · b853933e
  Sander Bollen authored 7 years ago
  
  b853933e
- horizontal graph · e91c2fd8
  Sander Bollen authored 7 years ago
  
  e91c2fd8
- rulegraph in readme · 92dd372c
  Sander Bollen authored 7 years ago
  
  92dd372c
- add example config and schema · 57d068c7
  Sander Bollen authored 7 years ago
  
  57d068c7
- remove extraneous config val · fbf97659
  Sander Bollen authored 7 years ago
  
  fbf97659
- collectstats should be an argument in mergestats · 2a93a74f
  Sander Bollen authored 7 years ago
  
  2a93a74f
Nov 28, 2017
- print seqtk command · 62cdd43b
  Sander Bollen authored 7 years ago
  
  62cdd43b
- fix collectstats · 00907053
  Sander Bollen authored 7 years ago
  
  00907053
- fix postq arg · 6d8f168c
  Sander Bollen authored 7 years ago
  
  6d8f168c
- fix sample_name argument · d05afdec
  Sander Bollen authored 7 years ago
  
  d05afdec
- guard against premature deletion of fastq files · 0e4f2a55
  Sander Bollen authored 7 years ago
  
  0e4f2a55
- fix typo · 98dd9055
  Sander Bollen authored 7 years ago
  
  98dd9055
- fix syntax error · 7db7cd43
  Sander Bollen authored 7 years ago
  
  7db7cd43
- fix syntax error · 7a983847
  Sander Bollen authored 7 years ago
  
  7a983847
- fix syntax error · 5307f8e8
  Sander Bollen authored 7 years ago
  
  5307f8e8
- mergestats job · bb737331
  Sander Bollen authored 7 years ago
  
  bb737331
- variadic options are not supported in click. · 2db14bba
  Sander Bollen authored 7 years ago
  
  Converted covstats option in collectstats to variadic argument
  2db14bba
- vcfstats rule · 5d99dd11
  Sander Bollen authored 7 years ago
  
  5d99dd11
- instantiate counters with zero. · ec366de8
  Sander Bollen authored 7 years ago
  
  ec366de8
- is_transition only works in python 2. · 3584db28
  Sander Bollen authored 7 years ago
  
  3584db28
Nov 27, 2017
- add vcfstats script · 0ef6b2d0
  Sander Bollen authored 7 years ago
  
  0ef6b2d0
- import snakemake directly · 2028513f
  Sander Bollen authored 7 years ago
  
  2028513f
- shell should derive from the snakemake object in a script directive · 9e796e0b
  Sander Bollen authored 7 years ago
  
  9e796e0b
- seqtk as script directive · 74038a8c
  Sander Bollen authored 7 years ago
  
  74038a8c
- fix syntax error · 45319a01
  Sander Bollen authored 7 years ago
  
  45319a01
Nov 24, 2017
- vcfstats stub · b39179b3
  Sander Bollen authored 7 years ago
  
  b39179b3
- conda directive for seqtk jobs · 5f6ea05b
  Sander Bollen authored 7 years ago
  
  5f6ea05b