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Fork of part 3 analysis of the script
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van Helden / gitcourse
Creative Commons Attribution 4.0 InternationalUpdated -
courses / Git course
Creative Commons Attribution 4.0 InternationalWebsite and materials for our Git courses
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Engraftment calculations based on One Codex species-level taxonomic classifications of shotgun metagenomic read sets of the FECBUD trial - a collaboration between the Netherlands Donor Feces Bank and Vedanta Biosciences.
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Sam Nooij / FECBUD microbiota analyses
BSD 3-Clause "New" or "Revised" LicenseMicrobiota analyses of metagenomic samples of ulcerative colitis patients and fecal microbiota transplantation donors in the FECBUD trial
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Sam Nooij / FECBUD functional analysis-HUMAnN
BSD 3-Clause "New" or "Revised" LicenseFunctional metagenomics analysis using the HUMAnN tool version 3
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Hoogenboom / fdstools
BSD 3-Clause "New" or "Revised" LicenseData analysis tools for Next Generation Sequencing of forensic DNA markers, including tools for characterisation and filtering of PCR stutter artefacts and other systemic noise, and for automatic detection of the alleles in a sample.
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Generate and Annotate DNAse-seq footprint with Transcription factor binding sites.
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Scripts used for differential gene expression analysis and its reporting (currently for RNA-seq data)
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