Mirror of https://github.com/LOVDnl/LOVD3.git

A collection of reusable WDL tasks. Category:Other

A collection of semi-reusable scripts, which are not part of any official toolchain

Engraftment calculations based on One Codex species-level taxonomic classifications of shotgun metagenomic read sets of the FECBUD trial - a collaboration between the Netherlands Donor Feces Bank and Vedanta Biosciences.

Analyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms

This repository gather all genomics data and analysis we performed on Zbtb24 in mouse embryonic stem cells.

MassyTools, ported to Python 3

Repository for Jianhui's snakemake pipeline

Repository containing a Snakemake ChIPseq pipeline for SE and PE datasets

Supporting material for our programming course

RNA-seq pipeline for AML diagnostics. Illustration from Anatomy & Physiology, licenced under the Creative Commons Attribution 3.0 Unported

Functional metagenomics analysis using the HUMAnN tool version 3

This is the user guide for the Shark CentOS-8 Slurm-20.02 cluster. This will give the user a short introduction to the cluster and how to use it.

This is the user guide for the Shark CentOS-8 Slurm-20.02 cluster. This will give the user a short introduction to the cluster and how to use it.