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Supporting material for our programming course

Shiny app designed by Ben Johnson to quickly analyze calcium trace outputs. Attached manual to explain the parameters and how to analyze your traces.

Cython bindings and Python interface to HMMER3.

Mirror of https://github.com/LOVDnl/LOVD3.git

Dependency free, Cython-compatible scoring matrices to use with biological sequences.

Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a method for fast database search.

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

Cython bindings and Python interface to Jess, a 3D template matching software.

LLS Proteome Project Repository for code and scripts used in the LLS Proteome Project

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.

Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

Website and materials for our Git courses