Explore projects
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Sam Nooij / R. gnavus comparative genomics
BSD 3-Clause "New" or "Revised" LicenseComparative genomics project of Ruminococcus gnavus, with additional prevalence and abundance analysis of worldwide metagenomic datasets.
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Martin Larralde / Mini 3Di
BSD 3-Clause "New" or "Revised" LicenseA NumPy port of the foldseek code for encoding protein structures to 3di.
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Mirrors / LOVD3
GNU General Public License v3.0 or laterMirror of https://github.com/LOVDnl/LOVD3.git
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Martin Larralde / PyFAMSA
GNU General Public License v3.0 onlyCython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
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Martin Larralde / Peptides.py
GNU General Public License v3.0 onlyPhysicochemical properties and indices for amino-acid sequences (ported from R).
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Martin Larralde / Pyrodigal
GNU General Public License v3.0 onlyCython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.
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Martin Larralde / Diced
GNU General Public License v3.0 onlyRust re-implementation of the MinCED algorithm to Detect Instances of CRISPRs in Environmental Data.
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Martin Larralde / LightMotif
MIT LicenseA lightweight platform-accelerated library for biological motif scanning using position weight matrices.
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Martin Larralde / gb-io.py
MIT LicenseA Python interface to gb-io, a fast GenBank parser and serializer written in Rust.
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Martin Larralde / PytrimAl
GNU General Public License v3.0 onlyCython bindings and Python interface to trimAl, a tool for automated alignment trimming.
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pongs / pongs-translation
MIT LicenseCode and tables for translation from variants to haplotypes.
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pongs / gstandaard-python
MIT LicenseUpdated -
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Martin Larralde / PyJess
MIT LicenseCython bindings and Python interface to Jess, a 3D template matching software.
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