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A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.

Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.

PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.

Physicochemical properties and indices for amino-acid sequences (ported from R).

Cython bindings and Python interface to Jess, a 3D template matching software.

A PyTorch implementation of Tree-structured Conditional Random Fields.

Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico.

Gene Clusters with Conditional Random Fields.

Cython bindings and Python interface to HMMER3.

A Python interface to gb-io, a fast GenBank parser and serializer written in Rust.

RNA-seq pipeline for AML diagnostics. Illustration from Anatomy & Physiology, licenced under the Creative Commons Attribution 3.0 Unported

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.

A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.

This is the user guide for the Shark CentOS-8 Slurm-20.02 cluster. This will give the user a short introduction to the cluster and how to use it.