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Git course
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47794768
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47794768
authored
Nov 30, 2015
by
Kielbasa
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PREPARATIONS.md
View file @
47794768
...
...
@@ -7,7 +7,7 @@
-
Martijn Vermaat (m.vermaat.hg@lumc.nl)
-
Jeroen Laros (j.f.j.laros@lumc.nl)
-
Wibowo Arindrarto (W.Arindrarto@lumc.nl)
-
Szymon Kiełbasa (S.M.Kielbasa@lumc.nl)
-
Szymon
M.
Kiełbasa (S.M.Kielbasa@lumc.nl)
## Program
...
...
@@ -27,7 +27,7 @@ Very preliminary, please update, extend, or comment.
| 13:00 |
**Git conflicts**
| Martijn Vermaat? | Merge conflicts, protected branches |
| 13:30 |
*Practical*
| | |
| 14:00 | Break | | |
| 14:30 |
**Data analysis**
| Szymon
Kiełbasa
|
[
GitLab use cases: markdown, reproducible reports from Rstudio
](
usecases/
)
|
| 14:30 |
**Data analysis**
| Szymon
M. Kiełbasa
|
[
GitLab use cases: markdown, reproducible reports from Rstudio
](
usecases/
)
|
| 15:00 |
*Practical*
| | |
| 15:30 | Leftover minutes | | TODO: assign to some lecture or practical |
| 16:00 | Questions, drinks | | |
...
...
README.md
View file @
47794768
# Code and data management with Git
This is the website for the course
*Code and data management with Git*
. This
course consists of a
introduction to working with the
[
Git
](
http://git-scm.com/
)
version control system for data analysis and is aimed primarily at researcher
s
in the LUMC.
course consists of a
n introduction to working with the
[
Git
](
http://git-scm.com/
)
version control system for data analysis and i
s
aimed primarily at researchers
in the LUMC.
The Git system is widely used by software developers, but can also be used for
project management. In the LUMC we use
[
GitLab
](
https://git.lumc.nl
)
as a
...
...
@@ -12,11 +12,82 @@ history, etc, GitLab makes your projects more reproducible and collaboration
with colleagues easy (
[
introduction
](
http://doc.gitlab.com/ce/gitlab-basics/README.html
)
).
## Course dates
## Coordinates
-
Date: December 1st, 2015
-
Time: 9:00 - 17:00
-
Location: T-0-010
-
Teachers:
-
Martijn Vermaat (m.vermaat.hg@lumc.nl)
-
Jeroen Laros (j.f.j.laros@lumc.nl)
-
Wibowo Arindrarto (W.Arindrarto@lumc.nl)
-
Szymon M. Kiełbasa (S.M.Kielbasa@lumc.nl)
## Program
This year the contents will be slightly less advanced on the technical side
(no branching, no git-annex). Instead, there is more focus on using the LUMC
GitLab server and using Git for data analysis projects.
| Time | Subject | Teacher | Contents |
| ----- | ----------------- | ----------------- | ------------------------- |
| 09:00 |
**Introduction**
| Jeroen Laros | Welcome, GitLab overview, SSH keys |
| 09:30 |
*Practical*
| | |
| 09:45 |
[
Git basics
](
http://bit.ly/lumc_git_basics
)
| Wibowo Arindrarto | Basic Git command line fu |
| 10:30 |
*Practical*
| | |
| 11:00 | Coffee | | |
| 11:15 |
**Git remotes**
| Martijn Vermaat | Sharing and collaborating via GitLab |
| 11:45 |
*Practical*
| | |
| 12:00 | Lunch | | |
| 13:00 |
*Practical*
| | |
| 13:30 |
**Git conflicts**
| Martijn Vermaat | Resolving merge conflicts, protected branches |
| 14:15 |
*Practical*
| | |
| 14:45 | Break | | |
| 15:00 |
[
Data analysis
](
usecases/
)
| Szymon M. Kiełbasa | More GitLab, Markdown, data analysis use case |
| 15:30 |
*Practical*
| | |
| 16:00 | Questions, drinks | | |
## Prerequisites
Affinity with the UNIX shell is required before taking the course. For
example, our
[
scripting course
](
https://humgenprojects.lumc.nl/trac/humgenprojects/wiki/scripting
)
is more than enough, or you could go though
[
tutorials 1-3 here
](
http://www.ee.surrey.ac.uk/Teaching/Unix/
)
.
We encourage you to bring your own laptop, but make sure it has a terminal and
[
Git
](
http://git-scm.com/
)
installed. We work with
[
Linux
](
http://en.wikipedia.org/wiki/Linux
)
, but Git also runs on Mac OSX. On
Windows, it is probably easiest to use something like
[
MobaXterm
](
http://mobaxterm.mobatek.net/
)
or
[
VirtualBox
](
https://www.virtualbox.org/
)
with
[
Ubuntu
](
http://www.ubuntu.com/
)
.
We can also provide you with a laptop that has all the required software
installed. The lessons are interactive, meaning that you really need a
laptop.
## Further reading
-
[
Code School - Try Git
](
https://try.github.io/
)
(
you
could even try this
before the course)
-
[
The entire Pro Git book
](
http://git-scm.com/book
)
on the official
[
Git
website
](
http://git-scm.com/
)
-
[
Ry's Git Tutorial
](
http://rypress.com/tutorials/git/index.html
)
-
[
Git tutorials at Atlassian
](
https://www.atlassian.com/git/tutorial
)
-
[
Learn Git Branching
](
http://pcottle.github.io/learnGitBranching/
)
-
[
Git cheat sheet
](
https://git.wiki.kernel.org/index.php/GitCheatSheet
)
(useful for printing)
## Past course dates
-
October 14th, 2013: Git introduction course
-
June 23rd, 2014: Git introduction course
-
**December 1st, 2015: Code and data management with Git**
(
[
preparations
](
PREPARATIONS.md
)
)
-
December 1st, 2015: Code and data management with Git
For corresponding snapshots of this repository, see
[
tags
](
https://git.lumc.nl/humgen/gitcourse/tags
)
.
...
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