Commits · release_v3.0.0 · biowdl / tasks

Mar 13, 2020
- update version in VERSION and CHANGELOG.md · c651dcfb
  Cats authored 5 years ago
  
  View commits for tag v3.0.0 v3.0.0
  
  c651dcfb
- update scripts · 915d8c43
  Cats authored 5 years ago
  
  915d8c43
Mar 12, 2020
- Merge pull request #196 from biowdl/BIOWDL-390 · 669ad5d5
  JasperBoom authored 5 years ago
  
  BIOWDL-390: Add tasks for the PacBio CCS workflow.
  Unverified
  
  669ad5d5
- Update CHANGELOG. · d9f55718
  JasperBoom authored 5 years ago
  
  d9f55718
- Update CHANGELOG. · 5fd73569
  JasperBoom authored 5 years ago
  
  5fd73569
- Last syntax update command section. · 9ee58adb
  JasperBoom authored 5 years ago
  
  9ee58adb
- Update command syntax. · 8550676a
  JasperBoom authored 5 years ago
  
  8550676a
- Rewrite command syntax. · 73b04864
  JasperBoom authored 5 years ago
  
  73b04864
- Rename tasks. · 19715aa2
  JasperBoom authored 5 years ago
  
  19715aa2
- Add missing plus sign. · c8b252a1
  JasperBoom authored 5 years ago
  
  c8b252a1
- Remove weird newline. · 08504128
  JasperBoom authored 5 years ago
  
  08504128
- Merge https://github.com/biowdl/tasks into BIOWDL-390 · 1bea2ffe
  JasperBoom authored 5 years ago
  
  1bea2ffe
- Update IsoSeq3 WDL file. · bc0152e3
  JasperBoom authored 5 years ago
  
  bc0152e3
- fix umitools dedup output · f2772fd0
  Cats authored 5 years ago
  
  f2772fd0
- fix umitools dedup output · 9f26f2cb
  Cats authored 5 years ago
  
  9f26f2cb
- Merge branch 'develop' of https://github.com/biowdl/tasks into BIOWDL-390. · 6d0ad7ad
  JasperBoom authored 5 years ago
  
  6d0ad7ad
- Update CHANGELOG. · a3118f8a
  JasperBoom authored 5 years ago
  
  a3118f8a
Mar 11, 2020
- Merge pull request #195 from biowdl/umi_stats · d0f378cc
  Cats authored 5 years ago
  
  make statsPrefix optional for umitools dedup
  Unverified
  
  d0f378cc
- Update CHANGELOG.md · 9fc05a16
  Cats authored 5 years ago
  
  Co-Authored-By: JasperBoom <jboom@infernum.nl>
  Unverified
  
  9fc05a16
- update changelog · 787b11e4
  Cats authored 5 years ago
  
  787b11e4
- Update parameter_meta Lima.wdl. · 38a76485
  JasperBoom authored 5 years ago
  
  38a76485
- make statsPrefix optional for umitools dedup · 62b74c14
  Cats authored 5 years ago
  
  62b74c14
- Upload WDL files CCS, Lima and IsoSeq3. · e22f2642
  JasperBoom authored 5 years ago
  
  e22f2642
- Update talon container. · 5977ad90
  JasperBoom authored 5 years ago
  
  5977ad90
- Merge pull request #194 from biowdl/refconfidence · 3dd889b7
  Ruben Vorderman authored 5 years ago
  
  Allow setting --emit-ref-confidence flag on haplotypecaller
  Unverified
  
  3dd889b7
- Update CHANGELOG.md · a5d0c443
  Ruben Vorderman authored 5 years ago
  
  Punctuation. Co-Authored-By: JasperBoom <jboom@infernum.nl>
  Unverified
  
  a5d0c443
- add check parameter_meta to pr template · 18e028ac
  Ruben Vorderman authored 5 years ago
  
  18e028ac
- add parameter_meta · 94332596
  Ruben Vorderman authored 5 years ago
  
  94332596
- update changelog · f23b631b
  Ruben Vorderman authored 5 years ago
  
  f23b631b
- Merge commit '328a1d43 ' into refconfidence · cc0bbb1c
  Ruben Vorderman authored 5 years ago
  
  cc0bbb1c
- add RefConfidence mode · 328a1d43
  Ruben Vorderman authored 5 years ago
  
  328a1d43
Mar 09, 2020
- Merge pull request #193 from biowdl/haplotypecalleroutputmode · 596ce9f8
  Ruben Vorderman authored 5 years ago
  
  add output mode to haplotypecaller
  Unverified
  
  596ce9f8
- add output mode to haplotypecaller · efa12219
  Ruben Vorderman authored 5 years ago
  
  efa12219
Mar 03, 2020
- add rtgMem parameter_meta · 414d8f3c
  Ruben Vorderman authored 5 years ago
  
  414d8f3c
- Merge pull request #192 from biowdl/KG-511 · 5c1d64b4
  Ruben Vorderman authored 5 years ago
  
  Adding tasks for clinical validation.
  Unverified
  
  5c1d64b4
- address review comments · bb689668
  Ruben Vorderman authored 5 years ago
  
  bb689668
Feb 25, 2020
- increase default memory · 8e1438b6
  Ruben Vorderman authored 5 years ago
  
  8e1438b6
- change default mem requirements · 57ac6f2c
  Ruben Vorderman authored 5 years ago
  
  57ac6f2c
- update changelog · df513d10
  Ruben Vorderman authored 5 years ago
  
  df513d10
- add allStats output · 474c1d39
  Ruben Vorderman authored 5 years ago
  
  474c1d39