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Commit 9f26f2cb authored by Cats's avatar Cats
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fix umitools dedup output

parent d0f378cc
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......@@ -96,9 +96,9 @@ task Dedup {
output {
File deduppedBam = outputBamPath
File deduppedBamIndex = outputBamIndex
File? editDistance = statsPrefix + "_edit_distance.tsv"
File? umiStats = statsPrefix + "_per_umi.tsv"
File? positionStats = statsPrefix + "_per_umi_per_position.tsv"
File? editDistance = select_first([statsPrefix, "stats"]) + "_edit_distance.tsv"
File? umiStats = select_first([statsPrefix, "stats"]) + "_per_umi.tsv"
File? positionStats = select_first([statsPrefix, "stats"]) + "_per_umi_per_position.tsv"
}
runtime {
......
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