Commits · d3832132227b8a2197ac0d0b602281223f44c82d · biowdl / tasks

May 19, 2020
- cleanup multiqc. Add comments on how it works · d3832132
  Ruben Vorderman authored 4 years ago
  
  d3832132
May 18, 2020
- make pdf files optional · 17cdbd13
  Ruben Vorderman authored 4 years ago
  
  17cdbd13
- hisat2.wdl · cf652ee3
  Ruben Vorderman authored 4 years ago
  
  cf652ee3
- add summary file to hisat2 task · e1806e2e
  Ruben Vorderman authored 4 years ago
  
  e1806e2e
- add reportfile output to star · 44a372ed
  Ruben Vorderman authored 4 years ago
  
  44a372ed
- fix parameter_meta' · d8271dc1
  Ruben Vorderman authored 4 years ago
  
  d8271dc1
- MultiQC should work directly with report files · c3dbda9b
  Ruben Vorderman authored 4 years ago
  
  c3dbda9b
May 14, 2020
- Merge pull request #207 from biowdl/starIndex · 7e60cb68
  Cats authored 4 years ago
  
  Add Star index task
  Unverified
  
  7e60cb68
- Merge branch 'develop' into starIndex · ef20cff3
  Cats authored 4 years ago
  
  Unverified
  
  ef20cff3
May 11, 2020
- Merge pull request #217 from biowdl/BIOWDL-457 · 57edcae1
  Ruben Vorderman authored 4 years ago
  
  Add necessary options for RNA genotyping to haplotypecaller.
  Unverified
  
  57edcae1
- Add extra parameter_meta options for haplotypecaller · 6693dcfa
  Ruben Vorderman authored 4 years ago
  
  6693dcfa
- Record change in changelog · 73867fd5
  Ruben Vorderman authored 4 years ago
  
  73867fd5
May 08, 2020
- make minconfidence treshold optional · 5ca28720
  Ruben Vorderman authored 4 years ago
  
  5ca28720
- add options specific for RNA haplotype calling · 859b722f
  Ruben Vorderman authored 4 years ago
  
  859b722f
Apr 30, 2020
- Merge pull request #216 from biowdl/BIOWDL-453 · a94a1d4b
  Jasper authored 4 years ago
  
  BIOWDL-453: Fix quotations in samtools sort.
  Unverified
  
  a94a1d4b
- Update CHANGELOG.md · 8aafaabd
  Jasper authored 4 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  Unverified
  
  8aafaabd
Apr 28, 2020
- Fix CHANGELOG. · 169de2d4
  JasperBoom authored 4 years ago
  
  169de2d4
- Fix quotations in samtools sort. · d9265c31
  JasperBoom authored 4 years ago
  
  d9265c31
Apr 21, 2020
- Merge pull request #215 from biowdl/BIOWDL-450 · fd60df60
  Jasper authored 4 years ago
  
  BIOWDL-450: Update/add new tasks to samtools and picard.
  Unverified
  
  fd60df60
- Update CHANGELOG.md. · 78cb350a
  JasperBoom authored 4 years ago
  
  78cb350a
- Fix travis error. · c03c5562
  JasperBoom authored 4 years ago
  
  c03c5562
- Reinstate symlink. · a80da1d9
  JasperBoom authored 4 years ago
  
  a80da1d9
- Address comments. · 441890ee
  JasperBoom authored 4 years ago
  
  441890ee
- Add GC parameter. · f423e53e
  JasperBoom authored 4 years ago
  
  f423e53e
- Update documentation. · 90c0270d
  JasperBoom authored 4 years ago
  
  90c0270d
- Address GitHub comments. · e3890adf
  JasperBoom authored 4 years ago
  
  e3890adf
Apr 20, 2020
- Fix travis error. · 7627c314
  JasperBoom authored 4 years ago
  
  7627c314
- Add new tasks to samtools and picard. · 117bde45
  JasperBoom authored 4 years ago
  
  117bde45
Apr 15, 2020
- Merge pull request #214 from biowdl/BIOWDL-449 · afb07b5a
  Jasper authored 5 years ago
  
  BIOWDL-449: Remove dirname command from output folder creation step.
  Unverified
  
  afb07b5a
- Update brackets. · 92c7e923
  JasperBoom authored 5 years ago
  
  92c7e923
- Remove dirname command from output folder creation step. · 98494a21
  JasperBoom authored 5 years ago
  
  98494a21
Apr 14, 2020
- Merge pull request #213 from biowdl/BIOWDL-448 · 3cc32bc7
  Jasper authored 5 years ago
  
  BIOWDL-448: Isoseq3 requires more memory by default.
  Unverified
  
  3cc32bc7
- Update CHANGELOG. · c10cc771
  JasperBoom authored 5 years ago
  
  c10cc771
- Isoseq3 requires more memory by default. · ee708b8e
  JasperBoom authored 5 years ago
  
  ee708b8e
Apr 09, 2020
- Merge pull request #211 from biowdl/BIOWDL-420 · 4c9f70bd
  Jasper authored 5 years ago
  
  BIOWDL-420: Replace mv command with cp.
  Unverified
  
  4c9f70bd
Apr 08, 2020
- Merge branch 'develop' into BIOWDL-420 · ff613d41
  Jasper authored 5 years ago
  
  Unverified
  
  ff613d41
- Update WDL files. · 04f0edc2
  JasperBoom authored 5 years ago
  
  04f0edc2
- Merge pull request #210 from biowdl/addSmoove · b1717493
  Cedrick Agaser authored 5 years ago
  
  Add smoove
  Unverified
  
  b1717493
- update smoove.wdl · b4e37856
  cagaser authored 5 years ago
  
  b4e37856
- add meta info for time_minutes · e37162e4
  cagaser authored 5 years ago
  
  e37162e4