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Created with Raphaël 2.2.08Oct7652129Sep24232116151411109742126Aug2420191817141312111076529Jul2827232221201716151397632130Jun29262524232219181716151211109854228May20191815141311876130Apr282120151410987632131Mar3026252423201918161312119325Feb2420131211107654331Jan30Update CHANGELOG.mdMerge pull request #253 from biowdl/BIOWDL-499Update changelogAdd whatshap tasksAdd deepvariant tasksAdd HsMetrics and VariantcallingMetrics to picardIncrease runtime and add sample name for pbmm2Make intervals optional for gatk GenotypeGVCFsAdd task for indexing PacBio bam filesSimplify lima output structureAdd bam index file as required input for isoseqEnsure that the index and bamfiles are in the same folderUpdate parameter_meta.fix bcftools filterUpdate samtools.wdlUpdate CHANGELOG.mdfix whitespaceMake sure the bam and pbi files are in the same foldersimplify-limasimplify-limaSimplify the lima task output structurefix bcftools filterUpdate ChangelogAdd parameter meta for threadstypoadd snpeff taskMerge remote-tracking branch 'origin/develop' into sageMerge pull request #251 from biowdl/BIOWDL-516Change indexing.BIOWDL-516BIOWDL-516Remove metrics file.Merge pull request #250 from biowdl/BIOWDL-499Merge branch 'BIOWDL-499' of https://github.com/biowdl/tasks into BIOWDL-499Make some outputs optional.Merge branch 'develop' into BIOWDL-499Merge pull request #249 from biowdl/BIOWDL-512Fix.Merge branch 'develop' into BIOWDL-499Merge develop.Complete parameter_meta.Merge branch 'develop' into BIOWDL-512Merge pull request #247 from biowdl/optional-indexingUpdate CHANGELOG.md