Commits · c0bbdd8c0c28a1091c38deaf9bda56a62d6dfc75 · biowdl / tasks

Jun 13, 2018
- Added gatk as a non jar command · c0bbdd8c
  pjvan_thof authored 6 years ago
  
  c0bbdd8c
Jun 11, 2018
- style · 01f15d00
  Cats authored 6 years ago
  
  01f15d00
- add bam index to ApplyBQSR input · 7957c85f
  Cats authored 6 years ago
  
  7957c85f
- style · e2c52a71
  Cats authored 6 years ago
  
  e2c52a71
Jun 08, 2018
- styling and paths · 8b27e8aa
  Cats authored 6 years ago
  
  8b27e8aa
May 30, 2018
- requested changes and memory settings · fb1a2c68
  Cats authored 6 years ago
  
  fb1a2c68
May 17, 2018
- use stdout() and fix regex · 52a6e6b1
  Cats authored 6 years ago
  
  52a6e6b1
May 07, 2018
- fix splitNCigarReads index output · 0c6f1f23
  Cats authored 6 years ago
  
  0c6f1f23
Apr 26, 2018
- update gatk.wdl · 8f114ab2
  Cats authored 6 years ago
  
  8f114ab2
Apr 25, 2018
- add limitBAMsortRAM · d1f31cb7
  Cats authored 6 years ago
  
  d1f31cb7
Apr 13, 2018
- fix SplitNCigarReads · 689a2f2c
  Cats authored 6 years ago
  
  689a2f2c
Apr 10, 2018
- change memory settings · f6d9691c
  Cats authored 6 years ago
  
  f6d9691c
Apr 06, 2018
- fix the way custom memory values are handeled? · 09f9e67f
  Cats authored 6 years ago
  
  09f9e67f
Apr 04, 2018
- adjust memory · 75742e19
  Cats authored 6 years ago
  
  75742e19
- adjust memory · b0d40e66
  Cats authored 6 years ago
  
  b0d40e66
Apr 03, 2018
- add runtime settings · 93240a92
  Cats authored 6 years ago
  
  93240a92
Mar 21, 2018
- add intervals option to SplitNCigarReads · a7104e27
  Cats authored 7 years ago
  
  a7104e27
Mar 20, 2018
- add fasta index and dict · 33f3aa9a
  Cats authored 7 years ago
  
  33f3aa9a
Mar 19, 2018
- add SplitNCigarReads · 817cb4ce
  Cats authored 7 years ago
  
  817cb4ce
Mar 12, 2018
- Adding precommands · a4effb10
  Peter van 't Hof authored 7 years ago
  
  a4effb10
Mar 09, 2018
- Adding combineGVFs · ccebb5b5
  Peter van 't Hof authored 7 years ago
  
  ccebb5b5
- Adding combineGVFs · b7e531ee
  Peter van 't Hof authored 7 years ago
  
  b7e531ee
- Added genotyping step · 3dacefb3
  Peter van 't Hof authored 7 years ago
  
  3dacefb3
- Fixed argument · 93c2816f
  Peter van 't Hof authored 7 years ago
  
  93c2816f
- Fixed argument · 6663e0b0
  Peter van 't Hof authored 7 years ago
  
  6663e0b0
- Fixed command · c90ca837
  Peter van 't Hof authored 7 years ago
  
  c90ca837
- Adding haplotypecaller step · 49c6df69
  Peter van 't Hof authored 7 years ago
  
  49c6df69
Mar 08, 2018
- Fixed file path · 9af24bc2
  Peter van 't Hof authored 7 years ago
  
  9af24bc2
- Added known sites · 7bfb1d6a
  Peter van 't Hof authored 7 years ago
  
  7bfb1d6a
- Fixed wrong memory settings · a62332f9
  Peter van 't Hof authored 7 years ago
  
  a62332f9
- Added bqsr · afa80b82
  Peter van 't Hof authored 7 years ago
  
  afa80b82