Commits · bee9200243fda3bab3f465400eaffba89c5766c1 · biowdl / tasks

May 17, 2018
- Merge branch 'master' into centrifuge-classify · bee92002
  Peter van 't Hof authored 6 years ago
  
  bee92002
- Merge pull request #12 from biowdl/flash · aebf426f
  Peter van 't Hof authored 6 years ago
  
  Adding flash task for combining overlapping reads
  aebf426f
- Merge branch 'master' into flash · d4219066
  Peter van 't Hof authored 6 years ago
  
  d4219066
- Merge pull request #14 from biowdl/STAR_limitBAMsortRAM · 61bba4a0
  Ruben Vorderman authored 6 years ago
  
  add limitBAMsortRAM to STAR and make sampleConfig write to file
  61bba4a0
- use stdout() and fix regex · 52a6e6b1
  Cats authored 6 years ago
  
  52a6e6b1
May 14, 2018
- Merge branch 'sampleConfig_to_file' into STAR_limitBAMsortRAM · 836e1648
  Cats authored 6 years ago
  
  836e1648
- stdout to file · 7e142153
  Cats authored 6 years ago
  
  7e142153
- Requested changes · 6cc4acb4
  Pappas authored 6 years ago
  
  6cc4acb4
- Merge branch 'master' into STAR_limitBAMsortRAM · 4795938f
  Cats authored 6 years ago
  
  4795938f
May 11, 2018
- Fix command indentation · a7a1986c
  Pappas authored 6 years ago
  
  a7a1986c
- Change copyright year · 45f40cb8
  Pappas authored 6 years ago
  
  45f40cb8
- Update centrifuge command and add kreport task · a8a6af81
  Pappas authored 6 years ago
  
  a8a6af81
May 09, 2018
- Added classify task and reordered alphabetically · c5815a22
  Pappas authored 6 years ago
  
  c5815a22
- Remove capturing log as output · 801f813a
  Pappas authored 6 years ago
  
  801f813a
May 08, 2018
- Add/remove runtime defaults · cd7e49ee
  Pappas authored 6 years ago
  
  cd7e49ee
- Remove comments for testing · 66f50ed9
  Pappas authored 6 years ago
  
  66f50ed9
- outDirPath to outdirPath for compatibility · f38b3de1
  Pappas authored 6 years ago
  
  f38b3de1
- Change cores to threads · d922d7b9
  Pappas authored 6 years ago
  
  d922d7b9
- Flash task · 91a6841a
  Pappas authored 6 years ago
  
  91a6841a
May 07, 2018
- Merge pull request #10 from biowdl/iterative · 2aff5d1d
  Peter van 't Hof authored 6 years ago
  
  Extra tasks required for assembly.
  2aff5d1d
- add input bam · 89f4ea33
  Ruben Vorderman authored 6 years ago
  
  89f4ea33
- only create link when output dir is given · ad62f715
  Ruben Vorderman authored 6 years ago
  
  ad62f715
- fix splitNCigarReads index output · 0c6f1f23
  Cats authored 6 years ago
  
  0c6f1f23
- evaluate outputpaths before command section · 30bfec34
  Ruben Vorderman authored 6 years ago
  
  View commits for tag phhv1assembly phhv1assembly
  
  30bfec34
May 04, 2018
- add extra operater to concatenateTextFiles · d619ed18
  Ruben Vorderman authored 6 years ago
  
  d619ed18
- added bwa index and samtools fastq · a5d69668
  Ruben Vorderman authored 6 years ago
  
  a5d69668
- add fastq task · b3545b27
  Ruben Vorderman authored 6 years ago
  
  b3545b27
May 03, 2018
- fix unicycler memory · 63c2d46b
  Ruben Vorderman authored 6 years ago
  
  63c2d46b
- fix a few issues in spades · dabe9af0
  Ruben Vorderman authored 6 years ago
  
  dabe9af0
Apr 26, 2018
- update gatk.wdl · 8f114ab2
  Cats authored 6 years ago
  
  8f114ab2
Apr 25, 2018
- add limitBAMsortRAM · d1f31cb7
  Cats authored 6 years ago
  
  d1f31cb7
Apr 18, 2018
- change license · f023e04b
  Ruben Vorderman authored 6 years ago
  
  f023e04b
- remove poretools.wdl · 97bff342
  Ruben Vorderman authored 6 years ago
  
  97bff342
- merge master · 10e3ffc6
  Ruben Vorderman authored 6 years ago
  
  10e3ffc6
Apr 17, 2018
- Merge pull request #8 from biowdl/run_time · 0ee95d1b
  Peter van 't Hof authored 6 years ago
  
  Run time settings and additional adjustments
  0ee95d1b
Apr 13, 2018
- fix SplitNCigarReads · 689a2f2c
  Cats authored 6 years ago
  
  689a2f2c
Apr 12, 2018
- fix Map key issue star · 24520e97
  Cats authored 6 years ago
  
  24520e97
- threads should be cpu · bce833ff
  Cats authored 6 years ago
  
  bce833ff
- typing fix · 79cbf42a
  Cats authored 6 years ago
  
  79cbf42a
Apr 11, 2018
- small adjustments regarding runtime · cc9f145f
  Cats authored 6 years ago
  
  cc9f145f