Commits · ac2824708cfa631a9d7e4cd979b11601b0dd072b · biowdl / tasks

Feb 03, 2020
- Update CHANGELOG. · ac282470
  JasperBoom authored 5 years ago
  
  ac282470
- Update Krona container. · 48ac569f
  JasperBoom authored 5 years ago
  
  48ac569f
Jan 31, 2020
- Add Centrifuge specific Krona task. · ca18e055
  JasperBoom authored 5 years ago
  
  ca18e055
Jan 30, 2020
- Replace moving with hardlinking. · 7ba4c125
  JasperBoom authored 5 years ago
  
  7ba4c125
- Fix command section for Inspect. · 457a3437
  JasperBoom authored 5 years ago
  
  457a3437
- Fix Centrifuge tests, where sometimes the index files could still not be located. · b260dad4
  JasperBoom authored 5 years ago
  
  b260dad4
Jan 29, 2020
- Merge pull request #180 from biowdl/BIOWDL-386 · 5b6ac00d
  Jasper Boom authored 5 years ago
  
  BIOWDL-386: Update parameter_meta and fix centrifuge index locating.
  Unverified
  
  5b6ac00d
- Update CHANGELOG. · 790444da
  JasperBoom authored 5 years ago
  
  790444da
- Update parameter_meta and fix centrifuge index locating. · 2105f016
  JasperBoom authored 5 years ago
  
  2105f016
Jan 28, 2020
- add missing parameter_meta · 801e82aa
  Cats authored 5 years ago
  
  801e82aa
- Merge pull request #179 from biowdl/BIOWDL-393 · 978b19c9
  Cats authored 5 years ago
  
  add index for commonvariantsites (CollectAllelicounts)
  Unverified
  
  978b19c9
- Merge branch 'develop' into BIOWDL-393 · ff026921
  Cats authored 5 years ago
  
  Unverified
  
  ff026921
- Merge pull request #178 from biowdl/BIOWDL-386 · 2e1a3165
  Jasper Boom authored 5 years ago
  
  BIOWDL-386: Fix issue where Centrifuge could not locate index files.
  Unverified
  
  2e1a3165
- Merge branch 'develop' into BIOWDL-393 · e2f5b23e
  Cats authored 5 years ago
  
  Unverified
  
  e2f5b23e
- update changelog · b9391264
  Cats authored 5 years ago
  
  b9391264
- add index for commonvariantsites · e1ed820e
  Cats authored 5 years ago
  
  e1ed820e
- Update CHANGELOG. · c3bd11df
  JasperBoom authored 5 years ago
  
  c3bd11df
- Fix issue where Centrifuge could not locate index files. · 5183e34f
  JasperBoom authored 5 years ago
  
  5183e34f
- Merge branch 'develop' of https://github.com/biowdl/tasks into develop · 710dccba
  Ruben Vorderman authored 5 years ago
  
  710dccba
- fix bug where text to file does not work with other shells than bash · 8dd64d7f
  Ruben Vorderman authored 5 years ago
  
  8dd64d7f
- Merge pull request #176 from biowdl/BIOWDL-385 · 2110981d
  Cats authored 5 years ago
  
  increase default memory for BWA mem
  Unverified
  
  2110981d
- Merge branch 'develop' into BIOWDL-385 · 47865f18
  Cats authored 5 years ago
  
  Unverified
  
  47865f18
- Merge pull request #175 from biowdl/BIOWDL-319 · 358ff942
  Cats authored 5 years ago
  
  make memory configurable in fastqc
  Unverified
  
  358ff942
- Merge branch 'develop' into BIOWDL-319 · 5de03804
  Cats authored 5 years ago
  
  Unverified
  
  5de03804
- Merge pull request #177 from biowdl/BIOWDL-386 · 824802a9
  Ruben Vorderman authored 5 years ago
  
  BIOWDL-386: Fix issue where centrifuge would fail on incorrect paths.
  Unverified
  
  824802a9
Jan 27, 2020
- Update CHANGELOG. · c548516d
  JasperBoom authored 5 years ago
  
  c548516d
- Fix issue where centrifuge would fail on incorrect paths. · 57b7c80c
  JasperBoom authored 5 years ago
  
  57b7c80c
- Merge branch 'develop' into BIOWDL-319 · 5a53af60
  Cats authored 5 years ago
  
  Unverified
  
  5a53af60
- Merge pull request #171 from biowdl/CNV_calling · 72c789d4
  Cats authored 5 years ago
  
  Add tasks for GATK CNV calling
  Unverified
  
  72c789d4
- update changelog · 0c7e1b4a
  Cats authored 5 years ago
  
  0c7e1b4a
- increase default memory for BWA mem · bf970477
  Cats authored 5 years ago
  
  bf970477
- update changelog · 9fe2ec86
  Cats authored 5 years ago
  
  9fe2ec86
- make memory configurable in fastqc · 95a40971
  Cats authored 5 years ago
  
  95a40971
- Merge remote-tracking branch 'origin/develop' into CNV_calling · 1194e70c
  Cats authored 5 years ago
  
  1194e70c
- update changelog · 85ceead3
  Cats authored 5 years ago
  
  85ceead3
- Merge pull request #173 from biowdl/BIOWDL-387 · 94e54514
  Ruben Vorderman authored 5 years ago
  
  Add bedtools intersect and text to file task.
  Unverified
  
  94e54514
- Merge branch 'develop' into BIOWDL-387 · 18093a4e
  Ruben Vorderman authored 5 years ago
  
  Unverified
  
  18093a4e
- Merge pull request #174 from biowdl/BIOWDL-386 · d8f269b9
  Ruben Vorderman authored 5 years ago
  
  BIOWDL-386: Centrifuge should use -U instead of -1 with single end data.
  Unverified
  
  d8f269b9
Jan 24, 2020
- fix various issues · 3ec31315
  Cats authored 5 years ago
  
  3ec31315
- typo · 3c3252d0
  Cats authored 5 years ago
  
  3c3252d0