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Commit 48ac569f authored by JasperBoom's avatar JasperBoom
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Update Krona container.

parent ca18e055
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......@@ -37,7 +37,7 @@ task Build {
Int threads = 5
String memory = "20G"
String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he860b03_3"
String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he513fc3_5"
}
command {
......@@ -107,7 +107,7 @@ task Classify {
Int threads = 4
String memory = "16G"
String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he860b03_3"
String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he513fc3_5"
}
Map[String, String] inputFormatOptions = {"fastq": "-q", "fasta": "-f", "qseq": "--qseq", "raw": "-r", "sequences": "-c"}
......@@ -184,7 +184,7 @@ task Inspect {
Int? across
String memory = "4G"
String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he860b03_3"
String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he513fc3_5"
}
Map[String, String] outputOptions = {"fasta": "", "names": "--names", "summary": "--summary", "conversionTable": "--conversion-table", "taxonomyTree": "--taxonomy-tree", "nameTable": "--name-table", "sizeTable": "--size-table"}
......@@ -307,7 +307,7 @@ task Kreport {
Int? minimumLength
String memory = "4G"
String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he860b03_3"
String dockerImage = "quay.io/biocontainers/centrifuge:1.0.4_beta--he513fc3_5"
}
command <<<
......@@ -362,7 +362,7 @@ task KTimportTaxonomy {
String outputPrefix
String memory = "4G"
String dockerImage = "quay.io/biocontainers/krona:2.7.1--pl526_1"
String dockerImage = "biocontainers/krona:v2.7.1_cv1"
}
command {
......
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