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Commit 457a3437 authored by JasperBoom's avatar JasperBoom
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Fix command section for Inspect.

parent b260dad4
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......@@ -187,7 +187,7 @@ task Inspect {
Map[String, String] outputOptions = {"fasta": "", "names": "--names", "summary": "--summary", "conversionTable": "--conversion-table", "taxonomyTree": "--taxonomy-tree", "nameTable": "--name-table", "sizeTable": "--size-table"}
command {
command <<<
set -e
mkdir -p "$(dirname ~{outputPrefix})"
indexPath=~{sub(indexFiles[0], "\.[0-9]\.cf", "")}
......@@ -198,7 +198,7 @@ task Inspect {
~{"--across " + across} \
$PWD/${indexBasename} \
> ~{outputPrefix + "/" + printOption}
}
>>>
output {
File outputInspect = outputPrefix + "/" + printOption
......
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