Commits · 9d7eaa0ddd41a25386020371472395d44889d543 · biowdl / tasks

Jun 17, 2019
- add sam RG stuff · 9d7eaa0d
  Ruben Vorderman authored 5 years ago
  
  9d7eaa0d
Jun 13, 2019
- add bowtie · e451d5e3
  Ruben Vorderman authored 5 years ago
  
  e451d5e3
Jun 11, 2019
- Merge pull request #111 from biowdl/BIOWDL-245 · 46385ddc
  Ruben Vorderman authored 5 years ago
  
  simpler md5sum check
  46385ddc
- simpler md5sum check · be6d03b1
  Ruben Vorderman authored 5 years ago
  
  be6d03b1
Jun 06, 2019
- Merge pull request #110 from biowdl/BIOWDL-245 · a0a93396
  Ruben Vorderman authored 5 years ago
  
  Fixes for germline-DNA pipeline. Removal of structs. Adding outputs.
  a0a93396
- addressed review comments · 0f6459f2
  Ruben Vorderman authored 5 years ago
  
  0f6459f2
- remove glob · 9ffaa72d
  Ruben Vorderman authored 5 years ago
  
  9ffaa72d
Jun 05, 2019
- add some stats · 04aebed6
  Ruben Vorderman authored 5 years ago
  
  04aebed6
Jun 04, 2019
- add referencedict · 3ad6842e
  Ruben Vorderman authored 5 years ago
  
  3ad6842e
- add fasta fais · 069816ec
  Ruben Vorderman authored 5 years ago
  
  069816ec
- remove more structs · ecd4888f
  Ruben Vorderman authored 5 years ago
  
  ecd4888f
- destroy another struct · 47389236
  Ruben Vorderman authored 5 years ago
  
  47389236
- destroy another struct · 2afe2c05
  Ruben Vorderman authored 5 years ago
  
  2afe2c05
- destroy structs · 8b0c60c0
  Ruben Vorderman authored 5 years ago
  
  8b0c60c0
- simplify further · c7498d84
  Ruben Vorderman authored 5 years ago
  
  c7498d84
- simplify · 18cdbddf
  Ruben Vorderman authored 5 years ago
  
  18cdbddf
- fix tabix · 13ce0fb1
  Ruben Vorderman authored 5 years ago
  
  13ce0fb1
- fix tabix · 9541e660
  Ruben Vorderman authored 5 years ago
  
  9541e660
- rewrite tabix · d1229d3e
  Ruben Vorderman authored 5 years ago
  
  d1229d3e
- index in the merge step · 7f939c34
  Ruben Vorderman authored 5 years ago
  
  7f939c34
- some additions · 77cff7b2
  Ruben Vorderman authored 5 years ago
  
  77cff7b2
- make samtools suitable for containers · 76f190c8
  Ruben Vorderman authored 5 years ago
  
  76f190c8
May 29, 2019
- make sure dir exists · 135c6dbc
  Ruben Vorderman authored 5 years ago
  
  135c6dbc
- check with bash container · 402af70c
  Ruben Vorderman authored 5 years ago
  
  402af70c
- Merge pull request #109 from biowdl/md5sums · 65af2ff6
  Ruben Vorderman authored 5 years ago
  
  md5sums should be Strings not Files
  65af2ff6
May 27, 2019
- Merge branch 'develop' into md5sums · ad48a623
  Cats authored 5 years ago
  
  ad48a623
May 20, 2019
- md5sums should be Strings not Files · 90b72efa
  Cats authored 5 years ago
  
  90b72efa
- add year to license · d8e02994
  Ruben Vorderman authored 5 years ago
  
  d8e02994
May 15, 2019
- Merge pull request #108 from biowdl/BIOWDL-232 · 6603d50f
  Ruben Vorderman authored 5 years ago
  
  Higher memory multipliers
  6603d50f
- increase memory multiplier · 041f157e
  Ruben Vorderman authored 5 years ago
  
  041f157e
May 13, 2019
- increase memory for vcf · b8914ee5
  Ruben Vorderman authored 5 years ago
  
  b8914ee5
- higher memory multiplier for fastqsplitter · 3bade33d
  Ruben Vorderman authored 5 years ago
  
  3bade33d
May 09, 2019
- Merge pull request #107 from biowdl/BIOWDL-232 · 204161df
  Ruben Vorderman authored 5 years ago
  
  Allow for unified adapters and contaminations input and set a default.
  204161df
- fix logic and formatting · 66c50d9b
  Ruben Vorderman authored 5 years ago
  
  66c50d9b
- correctify · 4f983c44
  Ruben Vorderman authored 5 years ago
  
  4f983c44
- newer version of cutadapt · 0cf0c068
  Ruben Vorderman authored 5 years ago
  
  0cf0c068
- allow for single adapter and contaminations input in cutadapt · d993500b
  Ruben Vorderman authored 5 years ago
  
  d993500b
May 07, 2019
- Merge pull request #106 from biowdl/BIOWDL-232 · c59afe49
  Ruben Vorderman authored 5 years ago
  
  Do not extract fastqc zip by default.
  c59afe49
- correct outputs · 42da877d
  Ruben Vorderman authored 5 years ago
  
  42da877d
- set extract default to false · b2918a10
  Ruben Vorderman authored 5 years ago
  
  b2918a10