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Commit c7498d84 authored by Ruben Vorderman's avatar Ruben Vorderman
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simplify further

parent 18cdbddf
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......@@ -204,11 +204,9 @@ task GatherBamFiles {
}
output {
IndexedBamFile outputBam = object {
file: outputBamPath,
index: sub(outputBamPath, ".bam$", ".bai"),
md5: outputBamPath + ".md5"
}
File outputBam = outputBamPath
File outputBamIndex = sub(outputBamPath, ".bam$", ".bai")
File outputBamMd5 = outputBamPath + ".md5"
}
runtime {
......@@ -429,10 +427,8 @@ task SortVcf {
}
output {
IndexedVcfFile outputVcf = object {
file: outputVcfPath,
index: outputVcfPath + ".tbi"
}
File outputVcf = outputVcfPath
File outputVcfIndex = outputVcfPath + ".tbi"
}
runtime {
......
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