remove glob

picard.wdl

@@ -95,7 +95,26 @@ task CollectMultipleMetrics {
         File qualityDistribution = basename + ".quality_distribution_metrics"
         File qualityDistributionPdf = basename + ".quality_distribution.pdf"
         File qualityYield = basename + ".quality_yield_metrics"
-        Array[File] allStats = glob(basename + "*")
+        # Using a glob is easier. But will lead to very ugly output directories.
+        Array[File] allStats = select_all([
+            alignmentSummary,
+            baitBiasDetail,
+            baitBiasSummary,
+            baseDistributionByCycle,
+            baseDistributionByCyclePdf,
+            errorSummary,
+            gcBiasDetail,
+            gcBiasPdf,
+            gcBiasSummary,
+            insertSizeHistogramPdf,
+            insertSize,
+            preAdapterDetail,
+            qualityByCycle,
+            qualityByCyclePdf,
+            qualityDistribution,
+            qualityDistributionPdf,
+            qualityYield
+        ])
     }
 
     runtime {