Commits · 8495de6156e96c2e0c4ecbfe77f2a9456134c666 · biowdl / tasks

Jan 10, 2020
- add parameter_meta to biowdl input converter and YamltoJson · 8495de61
  Cats authored 5 years ago
  
  8495de61
- add parameter_meta to bowtie · f37b2874
  Cats authored 5 years ago
  
  f37b2874
- add parameter_meta to samtools · 7b92c9f5
  Cats authored 5 years ago
  
  7b92c9f5
Jan 09, 2020
- add parameter_meta to multiqc · b4932de6
  Cats authored 5 years ago
  
  b4932de6
- update scripts · 370cef68
  Cats authored 5 years ago
  
  370cef68
- add parameter_meta to MarkDuplicates and MergeVCFs · 765cf25f
  Cats authored 5 years ago
  
  765cf25f
- typo · 843f0bfd
  Cats authored 5 years ago
  
  843f0bfd
- add parameter_meta for SplitNCigarReads, ReorderGlobbedScatter and ScatterRegions · 7aed677a
  Cats authored 5 years ago
  
  7aed677a
- add parameter_meta to CombineGVCFs, GatherBqsrReports, GenotypeGVCFs and HaplotypeCallerGvcf · bbb8ff15
  Cats authored 5 years ago
  
  bbb8ff15
Jan 08, 2020
- typos · 3dc469ed
  Cats authored 5 years ago
  
  3dc469ed
- add parameter_meta to BaseRecibrator · 0b2a14fc
  Cats authored 5 years ago
  
  0b2a14fc
- add parameter_meta to ApplyBQSR, GatherBamFiles and GatherVcfFiles · ba7b2545
  Cats authored 5 years ago
  
  ba7b2545
- update scripts · 1a84192c
  Cats authored 5 years ago
  
  1a84192c
- modify collect-columns parameter_meta · d07fee7b
  Cats authored 5 years ago
  
  d07fee7b
- typo · 3c8c9877
  Cats authored 5 years ago
  
  3c8c9877
- typo · a705eadf
  Cats authored 5 years ago
  
  a705eadf
- add parameter_meta to picard metrics · 624826f7
  Cats authored 5 years ago
  
  624826f7
Jan 06, 2020
- Merge pull request #167 from biowdl/update_htseq · d6bb5325
  Cats authored 5 years ago
  
  Update htseq version
  Unverified
  
  d6bb5325
- update changelog · ae1f3865
  Cats authored 5 years ago
  
  ae1f3865
- update htseq version · a976eacf
  Cats authored 5 years ago
  
  a976eacf
Dec 12, 2019
- Merge pull request #166 from biowdl/BIOWDL-371 · bc77095d
  Jasper Boom authored 5 years ago
  
  BIOWDL-371: Update TALON output to align with new version.
  Unverified
  
  bc77095d
- Add backslash. · 41930847
  Jasper Boom authored 5 years ago
  
  Unverified
  
  41930847
- Add space to talon config file flag. · b4567cd0
  JB authored 5 years ago
  
  b4567cd0
- Update config file flag. · 5b971487
  JB authored 5 years ago
  
  5b971487
- Update parameter_meta for TALON task to include config file. · c60c3f60
  JB authored 5 years ago
  
  c60c3f60
- Add config file to output for debug purposes. · 86f47320
  JB authored 5 years ago
  
  86f47320
- Merge branch 'develop' of https://github.com/biowdl/tasks into BIOWDL-371 · a94344d9
  JB authored 5 years ago
  
  a94344d9
- Merge pull request #165 from biowdl/update_scripts · 400d865d
  Cats authored 5 years ago
  
  update scripts submodule
  Unverified
  
  400d865d
- update changelog, remove unused inputs from cutadapt · 6271478e
  Cats authored 5 years ago
  
  6271478e
- Remove unnecasary plus sign. · 4de118eb
  Jasper Boom authored 5 years ago
  
  Co-Authored-By: DavyCats <davycats.dc@gmail.com>
  Unverified
  
  4de118eb
Dec 11, 2019
- Update scripts submodule. · b5b428f9
  JB authored 5 years ago
  
  b5b428f9
- Update parameter_meta for TALON task to now include the config file input requirements. · d682271f
  JB authored 5 years ago
  
  d682271f
- Update CHANGELOG. · 24879064
  JB authored 5 years ago
  
  24879064
- Move config file creation to talon task. · acec53cc
  JB authored 5 years ago
  
  acec53cc
- a few more linting things · f1204645
  Cats authored 5 years ago
  
  f1204645
- Remove left-over mv command, is now fixed by export TPMDIR=/tmp. · 84acc7eb
  JB authored 5 years ago
  
  84acc7eb
Dec 10, 2019
- Specify update in CHANGELOG better. · 862458d7
  JB authored 5 years ago
  
  862458d7
- Update TALON output to align with new version. · 46d05bb5
  JasperBoom authored 5 years ago
  
  46d05bb5
- fix SC2046 · 86182571
  Cats authored 5 years ago
  
  86182571
- adress unused inputs in bedtools sort · bea74f06
  Cats authored 5 years ago
  
  bea74f06