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Commit 84acc7eb authored by JB's avatar JB
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Remove left-over mv command, is now fixed by export TPMDIR=/tmp.

parent 862458d7
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......@@ -452,7 +452,6 @@ task Talon {
Float minimumCoverage = 0.9
Int minimumIdentity = 0
String outputPrefix
String configFileName = basename(configFile)
Int cores = 4
String memory = "25G"
......@@ -462,10 +461,9 @@ task Talon {
command {
set -e
mkdir -p $(dirname ~{outputPrefix})
mv ${configFile} ./${configFileName}
export TMPDIR=/tmp
talon \
~{"--f " + configFileName} \
~{"--f " + configFile} \
~{"--db " + databaseFile} \
~{"--build " + genomeBuild} \
~{"--threads " + cores} \
......
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