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biowdl
tasks
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d07fee7b
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d07fee7b
authored
5 years ago
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Cats
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modify collect-columns parameter_meta
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3c8c9877
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collect-columns.wdl
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@@ -44,49 +44,27 @@ task CollectColumns {
}
parameter_meta {
inputTables: {
description: "The tables from which columns should be taken.",
category: "required"
}
outputPath: {
description: "The path to which the output should be written.",
category: "required"
}
featureColumn: {
description: "Equivalent to the -f option of collect-columns.",
category: "common" # Should likely be controlled by the calling workflow
}
valueColumn: {
description: "Equivalent to the -c option of collect-columns.",
category: "common" # Should likely be controlled by the calling workflow
}
separator: {
description: "Equivalent to the -s option of collect-columns.",
category: "common" # Should likely be controlled by the calling workflow
}
sampleNames: {
description: "Equivalent to the -n option of collect-columns.",
category: "common" # Should likely be controlled by the calling workflow
}
header: {
description: "Equivalent to the -H flag of collect-columns.",
category: "common"
}
additionalAttributes: {
description: "Equivalent to the -a option of collect-columns.",
category: "advanced"
}
referenceGtf: {
description: "Equivalent to the -g option of collect-columns.",
category: "advanced"
}
featureAttribute: {
description: "Equivalent to the -F option of collect-columns.",
category: "advanced"
}
dockerImage: {
description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.",
category: "advanced"
}
inputTables: {description: "The tables from which columns should be taken.",
category: "required"}
outputPath: {description: "The path to which the output should be written.",
category: "required"}
featureColumn: {description: "Equivalent to the -f option of collect-columns.",
category: "advanced"}
valueColumn: {description: "Equivalent to the -c option of collect-columns.",
category: "advanced"}
separator: {description: "Equivalent to the -s option of collect-columns.",
category: "advanced"}
sampleNames: {description: "Equivalent to the -n option of collect-columns.",
category: "advanced"}
header: {description: "Equivalent to the -H flag of collect-columns.",
category: "advanced"}
additionalAttributes: {description: "Equivalent to the -a option of collect-columns.",
category: "advanced"}
referenceGtf: {description: "Equivalent to the -g option of collect-columns.",
category: "advanced"}
featureAttribute: {description: "Equivalent to the -F option of collect-columns.",
category: "advanced"}
dockerImage: {description: "The docker image used for this task. Changing this may result in errors which the developers may choose not to address.",
category: "advanced"}
}
}
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