Commits · 7be31de0743896fdbfbc82cbdb902378b358e8a7 · biowdl / tasks

Jun 19, 2018
- fix flatten issue? · 7be31de0
  Cats authored 6 years ago
  
  7be31de0
Jun 18, 2018
- Merge remote-tracking branch 'origin/BIOWDL-36' into BIOWDL-36 · 39ca1721
  pjvan_thof authored 6 years ago
  
  39ca1721
- remove duplicate -Xmx and -jar · ced5696b
  Cats authored 6 years ago
  
  ced5696b
- Fixing commandline arguments · 86aebe5b
  pjvan_thof authored 6 years ago
  
  86aebe5b
- WIP · 545cdb47
  pjvan_thof authored 6 years ago
  
  545cdb47
Jun 14, 2018
- fixing gatk mem option · d0fa5d55
  pjvan_thof authored 6 years ago
  
  d0fa5d55
- Fixing picard executables · 4841f1ce
  pjvan_thof authored 6 years ago
  
  4841f1ce
- Revert "Added glob's to output files" · 691a6392
  Peter van 't Hof authored 6 years ago
  
  This reverts commit 138d3606
  691a6392
- Revert "Fixing output" · 830a39b8
  Peter van 't Hof authored 6 years ago
  
  This reverts commit 17af04e8
  830a39b8
- Fixing output · 17af04e8
  Peter van 't Hof authored 6 years ago
  
  17af04e8
- Added glob's to output files · 138d3606
  Peter van 't Hof authored 6 years ago
  
  138d3606
Jun 13, 2018
- Add dbsnp to baserecalibraction · fcc09ede
  Peter van 't Hof authored 6 years ago
  
  fcc09ede
- Added dbsnp · cdd00894
  Peter van 't Hof authored 6 years ago
  
  cdd00894
- Fixing double args · dd862229
  Peter van 't Hof authored 6 years ago
  
  dd862229
- remove duplication · 549cd9f8
  Ruben Vorderman authored 6 years ago
  
  549cd9f8
- Update forgotten tool · 1885db3c
  pjvan_thof authored 6 years ago
  
  1885db3c
- all biopet tools now also usable with conda · 9ca8d3c4
  pjvan_thof authored 6 years ago
  
  9ca8d3c4
- Added picard as a non jar command · 27f54c49
  pjvan_thof authored 6 years ago
  
  27f54c49
- Added gatk as a non jar command · c0bbdd8c
  pjvan_thof authored 6 years ago
  
  c0bbdd8c
- Merge pull request #20 from biowdl/BIOWDL-25 · ad685f61
  Ruben Vorderman authored 6 years ago
  
  fix conda command SampleConfig
  ad685f61
- fix conda command SampleConfig · eddcbfff
  Cats authored 6 years ago
  
  eddcbfff
Jun 12, 2018
- Switch back to 31 · c38620cd
  pjvan_thof authored 6 years ago
  
  c38620cd
- Fixed url · 1f853146
  pjvan_thof authored 6 years ago
  
  1f853146
- Update jenkins file · a0145b76
  pjvan_thof authored 6 years ago
  
  a0145b76
- Merge pull request #17 from biowdl/BIOWDL-25 · c5eb0a76
  Peter van 't Hof authored 6 years ago
  
  Caching related changes
  c5eb0a76
- Merge branch 'master' into BIOWDL-25 · 4177a251
  Peter van 't Hof authored 6 years ago
  
  4177a251
- Merge branch 'master' into BIOWDL-25 · cb97a60c
  Cats authored 6 years ago
  
  cb97a60c
- Merge pull request #19 from biowdl/BIOPET-1008 · e75a3008
  Peter van 't Hof authored 6 years ago
  
  Switched executable
  e75a3008
- Added back toolJar as optional · 25cffcfa
  pjvan_thof authored 6 years ago
  
  25cffcfa
- Merge branch 'master' into BIOPET-1008 · bb01f989
  Peter van 't Hof authored 6 years ago
  
  bb01f989
- Merge pull request #18 from biowdl/BIOWDL-29 · c966b68a
  Peter van 't Hof authored 6 years ago
  
  Changes for QC pipeline
  c966b68a
- Merge branch 'master' into BIOWDL-29 · 3e6675a3
  Peter van 't Hof authored 6 years ago
  
  3e6675a3
- Merge pull request #16 from biowdl/BIOWDL-32 · 1011b862
  Peter van 't Hof authored 6 years ago
  
  Centrifuge related changes
  1011b862
- Merge branch 'master' into BIOWDL-29 · 7285450b
  Ruben Vorderman authored 6 years ago
  
  7285450b
Jun 11, 2018
- style · 01f15d00
  Cats authored 6 years ago
  
  01f15d00
- add bam index to ApplyBQSR input · 7957c85f
  Cats authored 6 years ago
  
  7957c85f
- style · e2c52a71
  Cats authored 6 years ago
  
  e2c52a71
- Added conda env · 58300734
  Peter van 't Hof authored 6 years ago
  
  58300734
Jun 08, 2018
- Merge branch 'BIOWDL-25' of https://github.com/biowdl/tasks into BIOWDL-25 · de411900
  Cats authored 6 years ago
  
  de411900
- styling and paths · 8b27e8aa
  Cats authored 6 years ago
  
  8b27e8aa