Commits · 75742e197da2b0db2779c9981a8eff33fb6aeeae · biowdl / tasks

Apr 04, 2018
- adjust memory · 75742e19
  Cats authored 6 years ago
  
  75742e19
- adjust memory · b0d40e66
  Cats authored 6 years ago
  
  b0d40e66
- ceil runtime memory (must be int) · c75fd8a5
  Cats authored 6 years ago
  
  c75fd8a5
- fix default memory? · b02601ad
  Cats authored 6 years ago
  
  b02601ad
- floats · 3ef4efa1
  Cats authored 6 years ago
  
  3ef4efa1
- floats · 1939a2a7
  Cats authored 6 years ago
  
  1939a2a7
- select_first instead of selectFirst · e9e8b9d7
  Cats authored 6 years ago
  
  e9e8b9d7
- runtime adjustments · e265f172
  Cats authored 6 years ago
  
  e265f172
- runtime adjustments bwa, exractAdapters · 6b394c91
  Cats authored 6 years ago
  
  6b394c91
- add memory settings to extractAdapters · a5d63187
  Cats authored 6 years ago
  
  a5d63187
- adjust sampleConfig memory · 85d6fe66
  Cats authored 6 years ago
  
  85d6fe66
- give sampleConfig more memory · 7c39cc66
  Cats authored 6 years ago
  
  7c39cc66
- add Xmx to sampleConfig · f7d97af6
  Cats authored 6 years ago
  
  f7d97af6
- fix SamplConfig dirname · 67fed40a
  Cats authored 6 years ago
  
  67fed40a
Apr 03, 2018
- add runtime settings · 93240a92
  Cats authored 6 years ago
  
  93240a92
Mar 29, 2018
- Merge pull request #7 from biowdl/intervals_SplitNCigarReads · 592164c0
  Peter van 't Hof authored 6 years ago
  
  add intervals option to SplitNCigarReads
  Unverified
  
  592164c0
- Merge branch 'master' into intervals_SplitNCigarReads · a09e3a5f
  Peter van 't Hof authored 6 years ago
  
  Unverified
  
  a09e3a5f
- Merge pull request #6 from biowdl/mergeCounts · 8159674a
  Peter van 't Hof authored 6 years ago
  
  add merge counts
  Unverified
  
  8159674a
- Merge branch 'master' into mergeCounts · bd611a3b
  Peter van 't Hof authored 6 years ago
  
  Unverified
  
  bd611a3b
- Merge pull request #4 from biowdl/quantification · fddfd687
  Peter van 't Hof authored 6 years ago
  
  Add quantification tools
  Unverified
  
  fddfd687
- Merge branch 'master' into quantification · eca9a4b6
  Peter van 't Hof authored 6 years ago
  
  Unverified
  
  eca9a4b6
Mar 21, 2018
- add intervals option to SplitNCigarReads · a7104e27
  Cats authored 7 years ago
  
  a7104e27
Mar 20, 2018
- Merge branch 'master' into mergeCounts · 8a800556
  Peter van 't Hof authored 7 years ago
  
  Unverified
  
  8a800556
- Merge pull request #5 from biowdl/splitNCigarReads · 385a1dfc
  Peter van 't Hof authored 7 years ago
  
  add SplitNCigarReads
  Unverified
  
  385a1dfc
- add precommand · b8414e7a
  Cats authored 7 years ago
  
  b8414e7a
- Merge branch 'splitNCigarReads' of https://github.com/biowdl/tasks into splitNCigarReads · 9766b090
  Cats authored 7 years ago
  
  9766b090
- add fasta index and dict · 33f3aa9a
  Cats authored 7 years ago
  
  33f3aa9a
- change to heredoc · b6b2b73e
  Cats authored 7 years ago
  
  b6b2b73e
Mar 19, 2018
- Merge branch 'master' into splitNCigarReads · 5d9cab2d
  Peter van 't Hof authored 7 years ago
  
  Unverified
  
  5d9cab2d
- add merge counts · 225505cf
  Cats authored 7 years ago
  
  225505cf
- add SplitNCigarReads · 817cb4ce
  Cats authored 7 years ago
  
  817cb4ce
Mar 16, 2018
- fix geneAbundance · 413953d8
  Cats authored 7 years ago
  
  413953d8
- add abundance file option to stringtie · 366f8ef1
  Cats authored 7 years ago
  
  366f8ef1
- add strandedness to stringtie · e5a86409
  Cats authored 7 years ago
  
  e5a86409
- fix output name stringtie.wdl · 09bf175d
  Cats authored 7 years ago
  
  09bf175d
- Merge branch 'quantification' of https://github.com/biowdl/tasks into quantification · f8fea5fe
  Cats authored 7 years ago
  
  f8fea5fe
- make outputs write to files and prefix is a must · ee155ce8
  Cats authored 7 years ago
  
  ee155ce8
- Merge branch 'master' into quantification · 89801929
  Peter van 't Hof authored 7 years ago
  
  Unverified
  
  89801929
- Merge pull request #3 from biowdl/star · 8155c98c
  Peter van 't Hof authored 7 years ago
  
  modify definition of defaults in star.wdl
  Unverified
  
  8155c98c
- Add quantification tools · 1c1a9554
  Cats authored 7 years ago
  
  1c1a9554