Commits · 6faafa2c782cc8eb41473c550f021ff85c21ad15 · biowdl / tasks

Aug 23, 2018
- remove defaults, these things should be specified · 6faafa2c
  Ruben Vorderman authored 6 years ago
  
  6faafa2c
Aug 20, 2018
- fix seqstats · 321d6d94
  Ruben Vorderman authored 6 years ago
  
  321d6d94
- add seqstat generate · cb854d98
  Ruben Vorderman authored 6 years ago
  
  cb854d98
- Merge pull request #47 from biowdl/BIOWDL-68 · 33e9f85f
  Cats authored 6 years ago
  
  Fix fastqc and cutadapt for use with WDL 1.0
  33e9f85f
- Merge branch 'BIOWDL-68' of https://github.com/biowdl/tasks into BIOWDL-68 · ebebb596
  Ruben Vorderman authored 6 years ago
  
  ebebb596
- change camelization · 0bf8c70f
  Ruben Vorderman authored 6 years ago
  
  0bf8c70f
- Merge branch 'develop' into BIOWDL-68 · 6460f924
  Ruben Vorderman authored 6 years ago
  
  6460f924
Aug 17, 2018
- Merge pull request #46 from biowdl/BIOWDL-57 · 3d914428
  Cats authored 6 years ago
  
  fix outputs for metrics picard metrics
  3d914428
- Merge branch 'develop' into BIOWDL-57 · eeb629df
  Ruben Vorderman authored 6 years ago
  
  eeb629df
- fix outputs · e0a9e37f
  Cats authored 6 years ago
  
  e0a9e37f
Aug 16, 2018
- Merge pull request #45 from biowdl/somatic · e45f6eed
  Ruben Vorderman authored 6 years ago
  
  Changes for somatic variantcalling
  e45f6eed
- Merge branch 'develop' into somatic · 490a0db3
  Cats authored 6 years ago
  
  490a0db3
Aug 15, 2018
- Merge pull request #44 from biowdl/fix_splitNCigarReads · 756c2d59
  Peter van 't Hof authored 6 years ago
  
  fix regex in slitNCigarReads
  756c2d59
- fix regex · 3e95c762
  Cats authored 6 years ago
  
  3e95c762
- iFixed R2 arg · 9b7c5ff9
  ffinfo authored 6 years ago
  
  9b7c5ff9
Aug 10, 2018
- fix SortVcf · 9a81f0d7
  Cats authored 6 years ago
  
  9a81f0d7
- add sequence dict to sortVcf · 7d5952d1
  Cats authored 6 years ago
  
  7d5952d1
- fix vardict memory? · d085b42f
  Cats authored 6 years ago
  
  d085b42f
- unpaired vardict fix, split strelka/manta configuration and run to fix retries · 8b0d6891
  Cats authored 6 years ago
  
  8b0d6891
- use proper perl-style regexes · 3f54ab63
  Ruben Vorderman authored 6 years ago
  
  3f54ab63
Aug 09, 2018
- add memory to vardict · 1bc3f6cc
  Cats authored 6 years ago
  
  1bc3f6cc
- add missing option in unpaired vardict · e8af9d1e
  Cats authored 6 years ago
  
  e8af9d1e
- Merge pull request #43 from biowdl/somatic · f724a471
  Peter van 't Hof authored 6 years ago
  
  fix somatic tasks and add supporting tasks
  f724a471
- Merge branch 'develop' into somatic · 4c1e509b
  Peter van 't Hof authored 6 years ago
  
  4c1e509b
- Remove samplesheet.wdl · 2b592518
  pjvan_thof authored 6 years ago
  
  2b592518
- Remove samplesheet.wdl · f2d1a01e
  pjvan_thof authored 6 years ago
  
  f2d1a01e
Aug 08, 2018
- add SortVcf task · 639b5ed3
  Cats authored 6 years ago
  
  639b5ed3
- various fixes · b71a1496
  Cats authored 6 years ago
  
  b71a1496
Aug 06, 2018
- add manta · 03064ae2
  Cats authored 6 years ago
  
  03064ae2
Aug 03, 2018
- remove unused input · 5eb693de
  Cats authored 6 years ago
  
  5eb693de
Aug 02, 2018
- fix somatic tasks and add supporting tasks · 0dc72531
  Cats authored 6 years ago
  
  0dc72531
Jul 31, 2018
- Merge pull request #40 from biowdl/various_new_tasks · c3f2adf6
  Cats authored 6 years ago
  
  Add Various new tasks
  c3f2adf6
Jul 30, 2018
- add varDict · ac408688
  Cats authored 6 years ago
  
  ac408688
- add README · 332ccdf0
  Cats authored 6 years ago
  
  332ccdf0
Jul 27, 2018
- remove runDir output · 9ade497f
  Cats authored 6 years ago
  
  9ade497f
- add Somatic strelka task · f9152ab2
  Cats authored 6 years ago
  
  f9152ab2
- Merge branch 'develop' into various_new_tasks · dc365941
  Cats authored 6 years ago
  
  dc365941
- Merge pull request #42 from biowdl/typo · 07f3ade6
  Ruben Vorderman authored 6 years ago
  
  typo
  07f3ade6
- typo · f67863d0
  Cats authored 6 years ago
  
  f67863d0
- Merge branch 'develop' into various_new_tasks · a99d51c6
  Cats authored 6 years ago
  
  a99d51c6