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Commit 7d5952d1 authored by Cats's avatar Cats
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add sequence dict to sortVcf

parent d085b42f
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1 merge request!45Changes for somatic variantcalling
......@@ -386,6 +386,7 @@ task SortVcf {
Array[File]+ vcfFiles
String outputVcf
File? sequenceDict
Int memory = 4
Float memoryMultiplier = 3.0
......@@ -401,6 +402,7 @@ task SortVcf {
~{toolCommand} \
SortVcf \
I=~{sep=" I=" vcfFiles} \
~{"SEQUENCE_DICTIONARY=" + sequenceDict} \
O=outputVcf
}
......
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