Merge pull request #44 from biowdl/fix_splitNCigarReads

fix regex in slitNCigarReads

Merge pull request #44 from biowdl/fix_splitNCigarReads
756c2d59 · Peter van 't Hof · GitHub · f724a471 · 3e95c762 · 756c2d59
Unverified Commit 756c2d59 authored 6 years ago by Peter van 't Hof Committed by GitHub 6 years ago
--- a/gatk.wdl
+++ b/gatk.wdl
@@ -373,7 +373,7 @@ task SplitNCigarReads {

    output {
        File bam = outputBam
-        File bamIndex = sub(outputBam, "\\.bam$", ".bai")
+        File bamIndex = sub(outputBam, "\.bam$", ".bai")
    }

    runtime {