Commits · 6abeb21415def4a8089ef4b4909fa30fb1bddcfc · biowdl / tasks

Aug 20, 2018
- Added sctruct for index files · 80d9b71d
  ffinfo authored 6 years ago
  
  80d9b71d
Jul 24, 2018
- turn optional with default into mandatory with default · 6425926f
  Cats authored 6 years ago
  
  6425926f
- reduce task complexities · 21643dbd
  Cats authored 6 years ago
  
  21643dbd
Jul 23, 2018
- added stylish newlines · 3d8b32b2
  Ruben Vorderman authored 6 years ago
  
  3d8b32b2
- bwa.wdl to 1.0 · 1c1f8955
  Ruben Vorderman authored 6 years ago
  
  1c1f8955
May 09, 2018
- solve caching problem in bwa.wdl · 9aa30710
  Ruben Vorderman authored 6 years ago
  
  9aa30710
- fix bwamem task · 3cb3a224
  Ruben Vorderman authored 6 years ago
  
  3cb3a224
- fix output of bwa index task · e10f8acc
  Ruben Vorderman authored 6 years ago
  
  e10f8acc
- fix output of bwa index task · 71f30e02
  Ruben Vorderman authored 6 years ago
  
  71f30e02
- fix bwa index output file error · 4e4f4bf8
  Ruben Vorderman authored 6 years ago
  
  4e4f4bf8
May 07, 2018
- only create link when output dir is given · ad62f715
  Ruben Vorderman authored 6 years ago
  
  ad62f715
May 04, 2018
- added bwa index and samtools fastq · a5d69668
  Ruben Vorderman authored 6 years ago
  
  a5d69668
Apr 12, 2018
- threads should be cpu · bce833ff
  Cats authored 6 years ago
  
  bce833ff
Apr 04, 2018
- runtime adjustments bwa, exractAdapters · 6b394c91
  Cats authored 6 years ago
  
  6b394c91
Apr 03, 2018
- add runtime settings · 93240a92
  Cats authored 6 years ago
  
  93240a92
Mar 12, 2018
- Adding precommands · a4effb10
  Peter van 't Hof authored 7 years ago
  
  a4effb10
Mar 01, 2018
- Adding alignment step · f91f5982
  pjvan_thof authored 7 years ago
  
  f91f5982
Feb 26, 2018
- update memory · f4f10f19
  Ruben Vorderman authored 7 years ago
  
  f4f10f19
Feb 22, 2018
- solved memory issues · f8555ebe
  Ruben Vorderman authored 7 years ago
  
  f8555ebe
Feb 09, 2018
- solved indexing issue · 00fd8d40
  Ruben Vorderman authored 7 years ago
  
  00fd8d40
Feb 08, 2018
- also give index · 0b157958
  Ruben Vorderman authored 7 years ago
  
  0b157958
- solved index problem · 5f7c9945
  Ruben Vorderman authored 7 years ago
  
  5f7c9945
- added bwa index task · 47035fb2
  Ruben Vorderman authored 7 years ago
  
  47035fb2
- use proper mkdir and dirname commands · e63040a8
  Ruben Vorderman authored 7 years ago
  
  e63040a8
Jan 31, 2018
- remove pipeline specific command from samtools.wdl · 85cdcf20
  Ruben Vorderman authored 7 years ago
  
  85cdcf20
- output as sorted and indexed bam · 05a55103
  Ruben Vorderman authored 7 years ago
  
  05a55103
- bugfixes' · da93300a
  Ruben Vorderman authored 7 years ago
  
  da93300a
Jan 30, 2018
- added bwa mem · 0a01070f
  Ruben Vorderman authored 7 years ago
  
  0a01070f